Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PWW25_RS14630 Genome accession   NZ_CP118584
Coordinates   3107429..3108538 (+) Length   369 a.a.
NCBI ID   WP_005450977.1    Uniprot ID   A0A8B3DBR0
Organism   Vibrio harveyi strain fish5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3102429..3113538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW25_RS14610 rsmB 3103348..3104631 (-) 1284 WP_005450981.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PWW25_RS14615 fmt 3104713..3105660 (-) 948 WP_009701851.1 methionyl-tRNA formyltransferase -
  PWW25_RS14620 def 3105694..3106212 (-) 519 WP_005450979.1 peptide deformylase -
  PWW25_RS14625 - 3106351..3107445 (+) 1095 WP_274876544.1 LysM peptidoglycan-binding domain-containing protein -
  PWW25_RS14630 dprA 3107429..3108538 (+) 1110 WP_005450977.1 DNA-processing protein DprA Machinery gene
  PWW25_RS14635 - 3108541..3109020 (+) 480 WP_005429833.1 DUF494 family protein -
  PWW25_RS14640 - 3109044..3109613 (+) 570 WP_005450974.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  PWW25_RS14645 - 3109677..3110810 (-) 1134 WP_005450972.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PWW25_RS14650 purE 3110815..3111300 (-) 486 WP_005440742.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PWW25_RS14655 - 3111500..3112057 (+) 558 WP_005450969.1 L-threonylcarbamoyladenylate synthase -
  PWW25_RS14660 hemF 3112092..3113009 (+) 918 WP_017817571.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39779.49 Da        Isoelectric Point: 6.0412

>NTDB_id=793676 PWW25_RS14630 WP_005450977.1 3107429..3108538(+) (dprA) [Vibrio harveyi strain fish5]
MKLRNDTDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVGYSTEQLQLLGFTTKQLQAWSEVDKEVDACLTWVSASSHHH
IVTLADTLYPPLLKQTVAPPPLLFIKGEASCLSQPQIAMVGSRNASVDGLQHARQFAADLVKHDLIVTSGLALGIDGHAH
DGALQADGKTIAVLGSGLEQVYPARHRGLARRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQDREVFAIPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSTPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=793676 PWW25_RS14630 WP_005450977.1 3107429..3108538(+) (dprA) [Vibrio harveyi strain fish5]
ATGAAACTACGCAATGATACTGACCTCGCCGCCTGGTTAAAGCTGAGCTGCTTGCCAGGCATTGGCGGGGTGAAGATGAA
TAAGCTGCTGAGTAAAGATACGCCAAGCAATATTGTCGGATACTCAACTGAGCAGCTTCAGCTTTTGGGTTTTACCACGA
AGCAACTGCAAGCATGGTCTGAGGTCGATAAAGAAGTCGACGCTTGTCTTACTTGGGTTAGCGCCTCATCTCATCATCAT
ATTGTTACTTTGGCGGATACTCTGTATCCCCCACTTCTCAAACAAACGGTCGCTCCACCTCCTTTACTATTTATAAAGGG
AGAAGCGAGTTGTTTGTCTCAACCTCAAATTGCCATGGTCGGCAGCCGTAATGCTAGTGTTGATGGGCTTCAACACGCAC
GTCAGTTCGCTGCAGATTTGGTGAAACATGATCTGATTGTTACCAGTGGTTTGGCTTTGGGTATCGATGGACACGCTCAT
GATGGTGCTTTGCAAGCGGACGGTAAAACCATTGCGGTATTGGGTTCAGGGTTAGAGCAAGTTTATCCAGCCCGTCACCG
AGGTTTAGCGCGGCGAGTGATGGAAAACGGTGCGTTAGTCTCTGAGTTTCGCCCAGATGCAAAACCTCGAGCAGAAAACT
TCCCACGACGTAATCGAATCATTAGTGGTTTGTCGCTTGGCGTGTTGGTTGTCGAAGCAGCAGAAAAGAGTGGCTCATTA
ATCACCGCTCGCTACGCTCTTGAGCAAGACCGTGAAGTTTTCGCTATACCAGCTTCGATTAATGCTCCCAATGCCAGTGG
TGGTAATCAGTTGATTCGTAATGGGGCTTGTCTCGTACAAAACACTCAAGAGGTGTTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTGGATTTATTTTCTACGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(314-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B3DBR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

93.225

100

0.932
  dprA Vibrio cholerae strain A1552

58.649

100

0.588
  dprA Glaesserella parasuis strain SC1401

46.667

100

0.474
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Legionella pneumophila strain ERS1305867

49.324

80.217

0.396
  dprA Neisseria meningitidis strain C311

36.829

100

0.39
  dprA Neisseria meningitidis MC58

36.829

100

0.39
  dprA Neisseria gonorrhoeae MS11

35.659

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

35.401

100

0.371