Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | PWW25_RS02030 | Genome accession | NZ_CP118584 |
| Coordinates | 430310..430609 (+) | Length | 99 a.a. |
| NCBI ID | WP_274876713.1 | Uniprot ID | - |
| Organism | Vibrio harveyi strain fish5 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 425310..435609
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PWW25_RS02020 | - | 427817..428089 (+) | 273 | WP_005430934.1 | HU family DNA-binding protein | - |
| PWW25_RS02025 | ppiD | 428305..430164 (+) | 1860 | WP_009698342.1 | peptidylprolyl isomerase | - |
| PWW25_RS02030 | comEA | 430310..430609 (+) | 300 | WP_274876713.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| PWW25_RS02035 | rrtA | 430762..431313 (-) | 552 | WP_005446582.1 | rhombosortase | - |
| PWW25_RS02040 | - | 431317..431934 (+) | 618 | WP_033008691.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| PWW25_RS02045 | - | 431985..433319 (-) | 1335 | WP_274877073.1 | anti-phage deoxyguanosine triphosphatase | - |
| PWW25_RS02050 | yfbR | 433323..433907 (-) | 585 | WP_005425568.1 | 5'-deoxynucleotidase | - |
| PWW25_RS02055 | - | 433991..435205 (-) | 1215 | WP_005446588.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10966.83 Da Isoelectric Point: 8.9385
>NTDB_id=793644 PWW25_RS02030 WP_274876713.1 430310..430609(+) (comEA) [Vibrio harveyi strain fish5]
MKWMLTLCLLLLAPMSWAEESKSTNTKAAKYEGIEITVNVNTASAQEIATMLKGIGEKKAKDIVEYRNEHGPFKTVADLT
KVKGIGDATVKKNEERILL
MKWMLTLCLLLLAPMSWAEESKSTNTKAAKYEGIEITVNVNTASAQEIATMLKGIGEKKAKDIVEYRNEHGPFKTVADLT
KVKGIGDATVKKNEERILL
Nucleotide
Download Length: 300 bp
>NTDB_id=793644 PWW25_RS02030 WP_274876713.1 430310..430609(+) (comEA) [Vibrio harveyi strain fish5]
ATGAAATGGATGTTAACACTGTGCTTATTACTCTTAGCACCGATGAGCTGGGCAGAAGAGAGTAAGTCGACTAACACAAA
AGCAGCTAAGTACGAAGGTATCGAGATTACGGTAAACGTAAATACAGCTTCAGCGCAAGAGATTGCCACCATGCTAAAGG
GTATTGGTGAAAAGAAAGCGAAAGATATCGTCGAATATCGTAATGAACACGGTCCTTTTAAAACCGTTGCGGATCTGACC
AAAGTGAAGGGCATTGGCGATGCCACGGTGAAAAAGAATGAAGAGCGTATTTTGTTGTAA
ATGAAATGGATGTTAACACTGTGCTTATTACTCTTAGCACCGATGAGCTGGGCAGAAGAGAGTAAGTCGACTAACACAAA
AGCAGCTAAGTACGAAGGTATCGAGATTACGGTAAACGTAAATACAGCTTCAGCGCAAGAGATTGCCACCATGCTAAAGG
GTATTGGTGAAAAGAAAGCGAAAGATATCGTCGAATATCGTAATGAACACGGTCCTTTTAAAACCGTTGCGGATCTGACC
AAAGTGAAGGGCATTGGCGATGCCACGGTGAAAAAGAATGAAGAGCGTATTTTGTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
83.838 |
100 |
0.838 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
74.747 |
100 |
0.747 |
| comEA | Vibrio cholerae C6706 |
56.566 |
100 |
0.566 |
| comEA | Vibrio cholerae strain A1552 |
56.566 |
100 |
0.566 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
41.071 |
100 |
0.465 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
40.187 |
100 |
0.434 |
| comEA | Acinetobacter baumannii strain A118 |
31.707 |
100 |
0.394 |
| comEA | Legionella pneumophila str. Paris |
37.374 |
100 |
0.374 |
| comEA | Legionella pneumophila strain ERS1305867 |
37.374 |
100 |
0.374 |
| comEA | Latilactobacillus sakei subsp. sakei 23K |
37.113 |
97.98 |
0.364 |