Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PWW29_RS15865 Genome accession   NZ_CP118582
Coordinates   3414848..3416071 (+) Length   407 a.a.
NCBI ID   WP_274883216.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3409848..3421071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW29_RS15845 ampD 3410866..3411417 (-) 552 WP_274883215.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PWW29_RS15850 nadC 3411510..3412397 (+) 888 WP_029790346.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PWW29_RS15855 - 3412662..3413129 (+) 468 WP_050933475.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PWW29_RS15860 pilB 3413129..3414814 (+) 1686 WP_017189132.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PWW29_RS15865 pilC 3414848..3416071 (+) 1224 WP_274883216.1 type II secretion system F family protein Machinery gene
  PWW29_RS15870 pilD 3416144..3417013 (+) 870 WP_005446255.1 A24 family peptidase Machinery gene
  PWW29_RS15875 coaE 3417014..3417628 (+) 615 WP_009703756.1 dephospho-CoA kinase -
  PWW29_RS15880 zapD 3417656..3418396 (+) 741 WP_005446251.1 cell division protein ZapD -
  PWW29_RS15885 yacG 3418453..3418653 (+) 201 WP_026000212.1 DNA gyrase inhibitor YacG -
  PWW29_RS15890 rplS 3418942..3419295 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  PWW29_RS15895 trmD 3419337..3420080 (-) 744 WP_005446247.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  PWW29_RS15900 rimM 3420108..3420656 (-) 549 WP_005446245.1 ribosome maturation factor RimM -
  PWW29_RS15905 rpsP 3420685..3420933 (-) 249 WP_004410028.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44971.28 Da        Isoelectric Point: 10.3829

>NTDB_id=793623 PWW29_RS15865 WP_274883216.1 3414848..3416071(+) (pilC) [Vibrio harveyi strain fish4]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEVEVRERLDAQHIKIKKLKKGSISFITKISHRVKGKDITVFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTKVIPEFEKMFTGFGAELPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIMLQRSDSFRLLTARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=793623 PWW29_RS15865 WP_274883216.1 3414848..3416071(+) (pilC) [Vibrio harveyi strain fish4]
ATGAAAACCATCGCTCCACAACTTAAGAACTACCGTTGGAAAGGCATTAATAGCTCGGGAAAAAAAACCTCTGGTAACGT
GCTCGCAATGACAGAAGTCGAGGTAAGAGAGCGCCTTGATGCTCAGCACATCAAGATAAAAAAACTCAAAAAAGGCAGTA
TTTCTTTTATCACCAAGATAAGTCATCGAGTAAAAGGCAAAGACATTACGGTGTTTACTCGTCAAATCGCCACCATGTTG
ATGACTGGCGTCCCTATTGTTCAGGCACTCAAGTTAGTTTCAGAGAACCATAAAAAAGCTGAAATGAAATCGATCCTAAT
GAGTGTGACGCGAGCGGTAGAAGCAGGGACACCGATGTCGAAAGCCATGCGTACCGCTAGCACGCACTTTGATCCACTTT
ACACCGACTTAATCGCAACAGGTGAGCAGTCCGGTAACTTATCCCAGGTCTTTGAGCGTCTGGCGACCTACCGAGAAAAA
AGTGAGCAGTTGCGTGCAAAGGTTATTAAAGCGCTCATTTACCCGGCGATGGTGGTATTAGTAGCACTTGGGGTTTCTTA
TTTAATGCTGACAAAGGTTATTCCTGAGTTTGAAAAAATGTTTACAGGTTTTGGTGCCGAATTACCCGCCTTCACCCAGA
TGGTACTCAACCTTTCTGCTTGGACCCAAAATTGGGGTCCCTTCATTGGGCTGAGCTTTGTGAGCTTACTCATTTCTGGC
AAAATCATGTTACAACGCTCCGACTCATTTCGTCTTTTGACTGCACGGTCGAGTTTAAGAGTACCTATTTTAGGACCAGT
TTTATCCAAAGCTGCCATTGCGAAGTTTAGCCGTACTTTGGCGACCAGTTTTAGCGCAGGTATTCCTATCCTAACCGCCT
TGAAAACTACCTCAAAAACCTCTGGTAACATGCACTATCAATTGGCAATCGAAGAGGTATATCGAGATACTGCCGCTGGT
ATGCCAATGTACATTGCCATGCGTAACTGTAACGTCTTCCCAGAATTGGTATTGCAAATGGTCATGATTGGTGAAGAGTC
AGGTCGCTTAGATGACATGCTCAACAAGATAGCCGCTATTTATGAGTTCGAAGTCGATAACACCGTCGACAACCTAAGTA
AGATTTTGGAACCGTTGATCATTGTTTTTCTGGGTGTCGTTGTCGGTGGTTTGGTGACAGCAATGTACTTACCAATCTTT
AACTTGATGAGCGTATTGGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

98.034

100

0.98
  pilC Vibrio cholerae strain A1552

74

98.28

0.727
  pilC Acinetobacter baylyi ADP1

42.462

97.789

0.415
  pilC Pseudomonas stutzeri DSM 10701

41.414

97.297

0.403
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilG Neisseria meningitidis 44/76-A

39.512

100

0.398
  pilG Neisseria gonorrhoeae MS11

39.803

100

0.398
  pilC Legionella pneumophila strain ERS1305867

39.163

99.754

0.391