Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PWW32_RS02825 Genome accession   NZ_CP118580
Coordinates   577625..578734 (+) Length   369 a.a.
NCBI ID   WP_017190971.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 572625..583734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW32_RS02805 rsmB 573544..574827 (-) 1284 WP_005450981.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PWW32_RS02810 fmt 574909..575856 (-) 948 WP_009701851.1 methionyl-tRNA formyltransferase -
  PWW32_RS02815 def 575890..576408 (-) 519 WP_005450979.1 peptide deformylase -
  PWW32_RS02820 - 576547..577641 (+) 1095 WP_005450978.1 LysM peptidoglycan-binding domain-containing protein -
  PWW32_RS02825 dprA 577625..578734 (+) 1110 WP_017190971.1 DNA-processing protein DprA Machinery gene
  PWW32_RS02830 - 578737..579216 (+) 480 WP_274792331.1 DUF494 family protein -
  PWW32_RS02835 - 579240..579809 (+) 570 WP_274792330.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  PWW32_RS02840 - 579873..581006 (-) 1134 WP_274792329.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PWW32_RS02845 purE 581011..581496 (-) 486 WP_005440742.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PWW32_RS02850 - 581696..582253 (+) 558 WP_017190968.1 L-threonylcarbamoyladenylate synthase -
  PWW32_RS02855 hemF 582288..583205 (+) 918 WP_009702131.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39733.41 Da        Isoelectric Point: 6.0412

>NTDB_id=793562 PWW32_RS02825 WP_017190971.1 577625..578734(+) (dprA) [Vibrio harveyi strain fish3]
MKLRNDTDLAAWLKLSCLPGIGGVKINKLLSKDTPSNIVGYSTEQLQLLGFTTKQLQAWSEVDKEVDACLTWASASSHHH
IVTLADTLYPPLLKQTVAPPPLLFIKGEASCLSQPQIAMVGSRNASVDGLQHARQFAADLVKHDLIVTSGLALGIDGHAH
DGALQADGKTIAVLGSGLEQVYPARHRGLARRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQDREVFAIPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSTPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=793562 PWW32_RS02825 WP_017190971.1 577625..578734(+) (dprA) [Vibrio harveyi strain fish3]
ATGAAACTACGCAATGATACTGACCTCGCCGCCTGGTTAAAGCTGAGCTGCTTGCCAGGCATTGGCGGGGTGAAGATAAA
TAAGCTGCTGAGCAAAGATACGCCAAGCAATATTGTCGGATACTCAACTGAGCAGCTTCAGCTTTTGGGTTTTACTACGA
AGCAACTGCAAGCATGGTCTGAGGTCGATAAAGAAGTCGACGCTTGTCTTACTTGGGCTAGCGCCTCATCTCATCATCAT
ATTGTTACTTTGGCGGATACTCTGTATCCCCCACTTCTCAAACAAACGGTCGCTCCACCTCCTTTATTATTTATAAAGGG
AGAAGCGAGTTGTTTGTCTCAACCTCAAATTGCCATGGTCGGCAGCCGTAATGCTAGTGTTGATGGGCTTCAACACGCAC
GTCAGTTCGCTGCAGATTTGGTGAAACATGATCTGATTGTTACCAGTGGTTTGGCTTTGGGTATCGATGGACACGCTCAT
GATGGTGCTTTGCAAGCGGACGGTAAAACCATTGCGGTATTGGGTTCAGGGTTAGAGCAAGTTTATCCAGCCCGTCACCG
AGGTTTAGCGCGGCGAGTGATGGAAAACGGTGCGTTAGTCTCTGAGTTTCGCCCAGATGCAAAACCTCGAGCAGAAAACT
TCCCACGACGTAATCGAATCATTAGTGGTTTGTCGCTTGGCGTGTTGGTTGTCGAAGCAGCAGAAAAGAGTGGCTCATTA
ATCACCGCTCGCTACGCTCTTGAGCAAGACCGTGAAGTTTTCGCTATACCAGCTTCGATTAATGCTCCCAATGCCAGTGG
TGGTAATCAGTTGATTCGTAATGGGGCTTGTCTCGTACAAAACACTCAAGAGGTGTTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTGGATTTATTTTCTACGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(314-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

92.683

100

0.927
  dprA Vibrio cholerae strain A1552

58.919

100

0.591
  dprA Glaesserella parasuis strain SC1401

47.2

100

0.48
  dprA Haemophilus influenzae Rd KW20

45

92.141

0.415
  dprA Legionella pneumophila strain ERS1305867

49.324

80.217

0.396
  dprA Neisseria meningitidis strain C311

36.829

100

0.39
  dprA Neisseria meningitidis MC58

36.829

100

0.39
  dprA Neisseria gonorrhoeae MS11

35.659

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

35.401

100

0.371