Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PWS06_RS01060 Genome accession   NZ_CP118532
Coordinates   226607..227716 (-) Length   369 a.a.
NCBI ID   WP_274790469.1    Uniprot ID   -
Organism   Vibrio harveyi strain 160-19     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 221607..232716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWS06_RS01030 hemF 222136..223053 (-) 918 WP_009699076.1 oxygen-dependent coproporphyrinogen oxidase -
  PWS06_RS01035 - 223088..223645 (-) 558 WP_274790468.1 L-threonylcarbamoyladenylate synthase -
  PWS06_RS01040 purE 223845..224330 (+) 486 WP_045401089.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PWS06_RS01045 - 224335..225468 (+) 1134 WP_050937891.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PWS06_RS01050 - 225532..226101 (-) 570 WP_005450974.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  PWS06_RS01055 - 226125..226604 (-) 480 WP_005429833.1 DUF494 family protein -
  PWS06_RS01060 dprA 226607..227716 (-) 1110 WP_274790469.1 DNA-processing protein DprA Machinery gene
  PWS06_RS01065 - 227700..228794 (-) 1095 WP_038897979.1 LysM peptidoglycan-binding domain-containing protein -
  PWS06_RS01070 def 228933..229451 (+) 519 WP_005450979.1 peptide deformylase -
  PWS06_RS01075 fmt 229485..230432 (+) 948 WP_110416405.1 methionyl-tRNA formyltransferase -
  PWS06_RS01080 rsmB 230514..231797 (+) 1284 WP_005450981.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39747.43 Da        Isoelectric Point: 6.0420

>NTDB_id=792961 PWS06_RS01060 WP_274790469.1 226607..227716(-) (dprA) [Vibrio harveyi strain 160-19]
MKLRNDTELAAWLKLSCLPGIGGVKINKLLSKDTPSNIVGYSTEQLQLLGFTTKQLQAWSEVDKEVDACLTWASASSHHH
IVTLADTLYPPLLKQTVAPPPLLFIKGEASCLSQPQIAMVGSRNASVDGLQHARQFAADLVKHDLIVTSGLALGIDGHAH
DGALQADGKTIAVLGSGLEQVYPARHRGLARRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQDREVFAIPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSTPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=792961 PWS06_RS01060 WP_274790469.1 226607..227716(-) (dprA) [Vibrio harveyi strain 160-19]
ATGAAACTACGCAATGATACTGAACTCGCCGCCTGGTTAAAGCTGAGCTGCTTGCCAGGCATTGGCGGGGTGAAGATAAA
TAAGCTGCTGAGCAAAGATACGCCAAGCAATATTGTCGGATACTCAACTGAGCAGCTTCAGCTTTTGGGTTTTACTACGA
AGCAACTGCAAGCATGGTCTGAGGTCGATAAAGAAGTCGACGCTTGTCTTACTTGGGCTAGCGCCTCATCTCATCATCAT
ATTGTTACTTTGGCGGATACTCTGTATCCCCCACTTCTCAAACAAACGGTCGCTCCACCTCCTTTACTATTTATAAAGGG
AGAAGCGAGTTGTTTGTCTCAACCTCAAATTGCCATGGTCGGCAGCCGTAATGCTAGTGTTGATGGGCTTCAACACGCAC
GTCAGTTCGCTGCAGATTTGGTGAAACATGATCTGATTGTTACCAGTGGTTTGGCTTTGGGTATCGATGGACACGCTCAT
GATGGTGCTTTGCAAGCGGACGGTAAAACCATTGCGGTATTGGGTTCAGGGTTAGAGCAAGTTTATCCAGCCCGTCACCG
AGGTTTAGCGCGGCGAGTGATGGAAAACGGTGCGTTAGTCTCTGAGTTTCGCCCAGATGCAAAACCTCGAGCAGAAAACT
TCCCACGACGTAATCGAATCATTAGTGGTTTGTCGCTTGGCGTGTTGGTTGTCGAAGCAGCAGAAAAGAGTGGCTCATTA
ATCACCGCTCGCTACGCTCTTGAGCAAGACCGTGAAGTTTTCGCTATACCAGCTTCGATTAATGCTCCCAATGCCAGTGG
TGGTAATCAGTTGATTCGTAATGGGGCTTGTCTCGTACAAAACACTCAAGAGGTGTTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTGGATTTATTTTCTACGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(314-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

92.412

100

0.924
  dprA Vibrio cholerae strain A1552

58.649

100

0.588
  dprA Glaesserella parasuis strain SC1401

47.2

100

0.48
  dprA Haemophilus influenzae Rd KW20

45

92.141

0.415
  dprA Legionella pneumophila strain ERS1305867

49.324

80.217

0.396
  dprA Neisseria meningitidis strain C311

36.524

100

0.393
  dprA Neisseria meningitidis MC58

36.524

100

0.393
  dprA Neisseria gonorrhoeae MS11

35.369

100

0.377
  dprA Neisseria gonorrhoeae strain FA1090

35.115

100

0.374