Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Q7592_RS30475 Genome accession   NZ_CP131782
Coordinates   6382414..6383010 (-) Length   198 a.a.
NCBI ID   WP_031671448.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2016N06-105     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6377414..6388010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7592_RS30455 (Q7592_30460) aroK 6378545..6379063 (-) 519 WP_003095833.1 shikimate kinase AroK -
  Q7592_RS30460 (Q7592_30465) pilQ 6379075..6381219 (-) 2145 Protein_6014 type 4a pilus secretin PilQ -
  Q7592_RS30465 (Q7592_30470) comL/pilP 6381273..6381797 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  Q7592_RS30470 (Q7592_30475) pilO 6381794..6382417 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q7592_RS30475 (Q7592_30480) pilN 6382414..6383010 (-) 597 WP_031671448.1 type 4a pilus biogenesis protein PilN Machinery gene
  Q7592_RS30480 (Q7592_30485) pilM 6383010..6384074 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  Q7592_RS30485 (Q7592_30490) - 6384259..6386730 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22183.52 Da        Isoelectric Point: 10.0895

>NTDB_id=792947 Q7592_RS30475 WP_031671448.1 6382414..6383010(-) (pilN) [Pseudomonas aeruginosa strain 2016N06-105]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPALNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=792947 Q7592_RS30475 WP_031671448.1 6382414..6383010(-) (pilN) [Pseudomonas aeruginosa strain 2016N06-105]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGGCCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369