Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   Q7592_RS07445 Genome accession   NZ_CP131782
Coordinates   1511965..1513458 (-) Length   497 a.a.
NCBI ID   WP_023128435.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2016N06-105     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1506965..1518458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7592_RS07410 (Q7592_07410) - 1508225..1508455 (-) 231 WP_012077218.1 hypothetical protein -
  Q7592_RS07415 (Q7592_07415) - 1508550..1508786 (+) 237 WP_012077217.1 helix-turn-helix transcriptional regulator -
  Q7592_RS07420 (Q7592_07420) - 1508791..1509906 (+) 1116 WP_012077216.1 tyrosine-type recombinase/integrase -
  Q7592_RS07425 (Q7592_07425) - 1509937..1510209 (-) 273 WP_003094362.1 HPr family phosphocarrier protein -
  Q7592_RS07430 (Q7592_07430) rapZ 1510239..1511099 (-) 861 WP_003094361.1 RNase adapter RapZ -
  Q7592_RS07435 (Q7592_07435) ptsN 1511101..1511565 (-) 465 WP_003098853.1 PTS IIA-like nitrogen regulatory protein PtsN -
  Q7592_RS07440 (Q7592_07440) raiA 1511579..1511887 (-) 309 WP_003094359.1 ribosome-associated translation inhibitor RaiA -
  Q7592_RS07445 (Q7592_07445) rpoN/rpoN1 1511965..1513458 (-) 1494 WP_023128435.1 RNA polymerase factor sigma-54 Machinery gene
  Q7592_RS07450 (Q7592_07450) lptB 1513684..1514409 (-) 726 WP_003094355.1 LPS export ABC transporter ATP-binding protein -
  Q7592_RS07455 (Q7592_07455) lptA 1514409..1514936 (-) 528 WP_003120916.1 lipopolysaccharide transport periplasmic protein LptA -
  Q7592_RS07460 (Q7592_07460) lptC 1514923..1515495 (-) 573 WP_034040549.1 LPS export ABC transporter periplasmic protein LptC -
  Q7592_RS07465 (Q7592_07465) - 1515504..1516043 (-) 540 WP_003098849.1 HAD family hydrolase -
  Q7592_RS07470 (Q7592_07470) kdsD 1516043..1517023 (-) 981 WP_003094347.1 arabinose-5-phosphate isomerase KdsD -
  Q7592_RS07475 (Q7592_07475) - 1517437..1518246 (+) 810 WP_003094343.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 56068.24 Da        Isoelectric Point: 4.4327

>NTDB_id=792897 Q7592_RS07445 WP_023128435.1 1511965..1513458(-) (rpoN/rpoN1) [Pseudomonas aeruginosa strain 2016N06-105]
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSDPLADGAEQAATAPQESPLQE
SATPSVESLDDDQWSERIPSELPVDTAWEDIYQTSASSLPSNDDDEWDFTARTSSGESLHSHLLWQVNLAPMSDTDRMIA
VTIIDSINNDGYLEESLEEILAAIDPELDVELDEVEVVLRRIQQLEPAGIGARNLRECLLLQLRQLPSTTPWLNEALRLV
SDYLDLLGGRDYSQLMRRMKLKEDELRQVIELIQCLHPRPGSQIESSEAEYIVPDVIVRKDNERWLVELNQEAMPRLRVN
ATYAGMVRRADSSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHEST
ISRVTTQKYMHTPRGIFELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLV

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=792897 Q7592_RS07445 WP_023128435.1 1511965..1513458(-) (rpoN/rpoN1) [Pseudomonas aeruginosa strain 2016N06-105]
ATGAAACCATCGCTAGTCCTCAAGATGGGCCAGCAGCTGACGATGACGCCGCAGCTGCAACAGGCCATACGCCTCCTCCA
GCTATCCACCCTGGACCTCCAGCAGGAAATCCAGGAAGCGCTGGAATCCAATCCCATGCTCGAACGCCAGGAAGACGGCG
ACGATTTCGACAACAGCGACCCTCTCGCCGATGGCGCCGAACAGGCGGCCACCGCGCCCCAGGAGAGCCCCCTCCAGGAA
AGCGCCACGCCCAGCGTCGAAAGCCTCGACGACGACCAGTGGAGCGAACGCATACCCAGCGAGTTGCCGGTGGATACCGC
CTGGGAAGACATCTACCAGACCAGCGCCAGCAGCCTGCCCAGCAACGACGATGACGAGTGGGACTTCACCGCGCGCACCA
GCAGCGGCGAGAGCCTGCACAGCCACCTGCTCTGGCAGGTCAACCTGGCACCGATGTCGGACACCGATCGGATGATCGCG
GTGACCATCATCGATAGCATCAACAACGATGGCTACCTCGAAGAGTCCCTCGAAGAAATCCTCGCCGCCATCGATCCGGA
ACTGGACGTCGAGCTCGACGAAGTGGAAGTCGTGCTGCGCCGCATCCAGCAACTGGAACCCGCCGGCATCGGCGCCCGCA
ACCTGCGCGAGTGCCTGCTGCTGCAACTGCGCCAGTTGCCGTCCACCACGCCCTGGCTGAACGAAGCGCTGCGCCTGGTA
TCCGACTACCTCGACCTGCTCGGCGGCCGCGACTACAGCCAATTGATGCGGCGCATGAAGCTCAAGGAAGACGAACTGCG
CCAGGTCATCGAGCTGATCCAGTGCCTGCATCCCCGGCCCGGTTCGCAGATCGAATCGAGCGAAGCCGAATACATCGTCC
CCGACGTCATCGTGCGCAAGGACAACGAGCGCTGGCTGGTCGAGCTGAACCAGGAGGCGATGCCACGCCTGCGCGTCAAC
GCCACCTACGCCGGCATGGTCCGCCGCGCCGACAGCAGCGCCGACAATACCTTCATGCGCAACCAGTTGCAGGAAGCCCG
CTGGTTCATCAAGAGCCTGCAGAGCCGCAACGAAACGCTGATGAAGGTCGCCACCCAGATCGTCGAGCACCAGCGCGGTT
TCCTCGACTACGGCGAAGAAGCCATGAAGCCGCTGGTCCTGCACGACATCGCCGAAGCGGTGGGCATGCACGAATCGACC
ATTTCGCGGGTCACCACGCAGAAATACATGCATACGCCGCGCGGCATTTTCGAGCTGAAATATTTCTTTTCAAGTCACGT
CAGTACCGCCGAAGGCGGGGAATGCTCGTCCACCGCGATCCGCGCGATCATCAAGAAACTGGTGGCCGCGGAAAATGCGA
AAAAGCCATTGAGCGACAGCAAGATCGCTGGTTTACTGGAGGCACAGGGCATTCAAGTGGCTCGCCGCACCGTCGCCAAA
TACCGCGAATCCCTGGGCATAGCCCCTTCGAGCGAGCGCAAGCGACTGGTGTGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-495)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.654

100

0.477