Detailed information NTG0792895

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PWS04_RS09480
• Genome accession: NZ_CP118528
• Coordinates: 1950684..1951553 (-)
• Length: 289 a.a.
• NCBI ID: WP_045488712.1
• Uniprot ID: A0A9X3MI55
• Organism: Vibrio harveyi strain 94/17
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1945684..1956553

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWS04_RS09445	rpsP	1946487..1946735 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
PWS04_RS09450	rimM	1946764..1947312 (+)	549	WP_005446245.1	ribosome maturation factor RimM	-
PWS04_RS09455	trmD	1947340..1948083 (+)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PWS04_RS09460	rplS	1948125..1948478 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
PWS04_RS09465	yacG	1949044..1949244 (-)	201	WP_026000212.1	DNA gyrase inhibitor YacG	-
PWS04_RS09470	zapD	1949301..1950041 (-)	741	WP_038897986.1	cell division protein ZapD	-
PWS04_RS09475	coaE	1950069..1950683 (-)	615	WP_050922069.1	dephospho-CoA kinase	-
PWS04_RS09480	pilD	1950684..1951553 (-)	870	WP_045488712.1	A24 family peptidase	Machinery gene
PWS04_RS09485	pilC	1951626..1952849 (-)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
PWS04_RS09490	pilB	1952883..1954568 (-)	1686	WP_005446257.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PWS04_RS09495	-	1954568..1955035 (-)	468	WP_050933475.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PWS04_RS09500	nadC	1955300..1956187 (-)	888	WP_199449848.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32576.76 Da
• Isoelectric Point: 7.5715

>NTDB_id=792895 PWS04_RS09480 WP_045488712.1 1950684..1951553(-) (pilD) [Vibrio harveyi strain 94/17]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISHVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=792895 PWS04_RS09480 WP_045488712.1 1950684..1951553(-) (pilD) [Vibrio harveyi strain 94/17]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGGATCAGCCATGTAAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGTTGGGCTGGCAATCTCTGCCGATGATCATTTTGCTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAACTGCGCCTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGCCCTTACCTTGCAATTGC
AGGATGGGTGAGCTTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	96.886	100	0.969
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436