Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PWS04_RS05875 Genome accession   NZ_CP118528
Coordinates   1233806..1234915 (-) Length   369 a.a.
NCBI ID   WP_017190971.1    Uniprot ID   -
Organism   Vibrio harveyi strain 94/17     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1228806..1239915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWS04_RS05845 hemF 1229335..1230252 (-) 918 WP_009702131.1 oxygen-dependent coproporphyrinogen oxidase -
  PWS04_RS05850 - 1230287..1230844 (-) 558 WP_017190968.1 L-threonylcarbamoyladenylate synthase -
  PWS04_RS05855 purE 1231044..1231529 (+) 486 WP_005440742.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PWS04_RS05860 - 1231534..1232667 (+) 1134 WP_274792329.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PWS04_RS05865 - 1232731..1233300 (-) 570 WP_274792330.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  PWS04_RS05870 - 1233324..1233803 (-) 480 WP_274792331.1 DUF494 family protein -
  PWS04_RS05875 dprA 1233806..1234915 (-) 1110 WP_017190971.1 DNA-processing protein DprA Machinery gene
  PWS04_RS05880 - 1234899..1235993 (-) 1095 WP_005450978.1 LysM peptidoglycan-binding domain-containing protein -
  PWS04_RS05885 def 1236132..1236650 (+) 519 WP_005450979.1 peptide deformylase -
  PWS04_RS05890 fmt 1236684..1237631 (+) 948 WP_009701851.1 methionyl-tRNA formyltransferase -
  PWS04_RS05895 rsmB 1237713..1238996 (+) 1284 WP_005450981.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39733.41 Da        Isoelectric Point: 6.0412

>NTDB_id=792875 PWS04_RS05875 WP_017190971.1 1233806..1234915(-) (dprA) [Vibrio harveyi strain 94/17]
MKLRNDTDLAAWLKLSCLPGIGGVKINKLLSKDTPSNIVGYSTEQLQLLGFTTKQLQAWSEVDKEVDACLTWASASSHHH
IVTLADTLYPPLLKQTVAPPPLLFIKGEASCLSQPQIAMVGSRNASVDGLQHARQFAADLVKHDLIVTSGLALGIDGHAH
DGALQADGKTIAVLGSGLEQVYPARHRGLARRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQDREVFAIPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSTPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=792875 PWS04_RS05875 WP_017190971.1 1233806..1234915(-) (dprA) [Vibrio harveyi strain 94/17]
ATGAAACTACGCAATGATACTGACCTCGCCGCCTGGTTAAAGCTGAGCTGCTTGCCAGGCATTGGCGGGGTGAAGATAAA
TAAGCTGCTGAGCAAAGATACGCCAAGCAATATTGTCGGATACTCAACTGAGCAGCTTCAGCTTTTGGGTTTTACTACGA
AGCAACTGCAAGCATGGTCTGAGGTCGATAAAGAAGTCGACGCTTGTCTTACTTGGGCTAGCGCCTCATCTCATCATCAT
ATTGTTACTTTGGCGGATACTCTGTATCCCCCACTTCTCAAACAAACGGTCGCTCCACCTCCTTTATTATTTATAAAGGG
AGAAGCGAGTTGTTTGTCTCAACCTCAAATTGCCATGGTCGGCAGCCGTAATGCTAGTGTTGATGGGCTTCAACACGCAC
GTCAGTTCGCTGCAGATTTGGTGAAACATGATCTGATTGTTACCAGTGGTTTGGCTTTGGGTATCGATGGACACGCTCAT
GATGGTGCTTTGCAAGCGGACGGTAAAACCATTGCGGTATTGGGTTCAGGGTTAGAGCAAGTTTATCCAGCCCGTCACCG
AGGTTTAGCGCGGCGAGTGATGGAAAACGGTGCGTTAGTCTCTGAGTTTCGCCCAGATGCAAAACCTCGAGCAGAAAACT
TCCCACGACGTAATCGAATCATTAGTGGTTTGTCGCTTGGCGTGTTGGTTGTCGAAGCAGCAGAAAAGAGTGGCTCATTA
ATCACCGCTCGCTACGCTCTTGAGCAAGACCGTGAAGTTTTCGCTATACCAGCTTCGATTAATGCTCCCAATGCCAGTGG
TGGTAATCAGTTGATTCGTAATGGGGCTTGTCTCGTACAAAACACTCAAGAGGTGTTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTGGATTTATTTTCTACGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(314-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

92.683

100

0.927
  dprA Vibrio cholerae strain A1552

58.919

100

0.591
  dprA Glaesserella parasuis strain SC1401

47.2

100

0.48
  dprA Haemophilus influenzae Rd KW20

45

92.141

0.415
  dprA Legionella pneumophila strain ERS1305867

49.324

80.217

0.396
  dprA Neisseria meningitidis strain C311

36.829

100

0.39
  dprA Neisseria meningitidis MC58

36.829

100

0.39
  dprA Neisseria gonorrhoeae MS11

35.659

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

35.401

100

0.371