Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | PVK79_RS04020 | Genome accession | NZ_CP118496 |
| Coordinates | 909851..911077 (-) | Length | 408 a.a. |
| NCBI ID | WP_257325350.1 | Uniprot ID | - |
| Organism | Pseudoalteromonas rhizosphaerae strain hCg-42 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 904851..916077
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PVK79_RS04000 | yacG | 904946..905176 (-) | 231 | WP_182735849.1 | DNA gyrase inhibitor YacG | - |
| PVK79_RS04005 | pilB | 905244..906923 (-) | 1680 | WP_145235193.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PVK79_RS04010 | coaE | 907063..907695 (-) | 633 | WP_257325349.1 | dephospho-CoA kinase | - |
| PVK79_RS04015 | pilD | 907697..908596 (-) | 900 | WP_274804052.1 | A24 family peptidase | Machinery gene |
| PVK79_RS04020 | pilC | 909851..911077 (-) | 1227 | WP_257325350.1 | type II secretion system F family protein | Machinery gene |
| PVK79_RS04025 | - | 911080..912396 (-) | 1317 | WP_257325351.1 | hypothetical protein | - |
| PVK79_RS04030 | - | 912451..912900 (-) | 450 | WP_257325352.1 | pilin | - |
| PVK79_RS04035 | nadC | 913437..914282 (-) | 846 | WP_145235208.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| PVK79_RS04040 | - | 914498..915192 (+) | 695 | Protein_780 | transposase | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 44252.32 Da Isoelectric Point: 9.5245
>NTDB_id=792831 PVK79_RS04020 WP_257325350.1 909851..911077(-) (pilC) [Pseudoalteromonas rhizosphaerae strain hCg-42]
MAKQPDKKGFDTFEWVGVSARGKRLEGEMTGASIALVKAQLRKQGITPSKVKRKAKPLFGVRMQAITPKDIALVTRQIAT
MLMAGVPLIQSIEMIGTGSTNKSVTKLMETVGDEVKAGGALSDALRKHPRYFDDLYCDLVASGEQSGALDKIFDRVALYK
EKSEALKSKIKKAMFYPIAVLVVALIVTSILLIFVVPQFQDIFAGFGAELPAFTLMVIAISEFMQEYWWIILIALFGFGY
AYKEALLKSKKLRDATDRAILKMPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILDIKAEVS
SGNQMNWAMRNSKIFPDMVIQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIIAMYLP
IFQLGAVI
MAKQPDKKGFDTFEWVGVSARGKRLEGEMTGASIALVKAQLRKQGITPSKVKRKAKPLFGVRMQAITPKDIALVTRQIAT
MLMAGVPLIQSIEMIGTGSTNKSVTKLMETVGDEVKAGGALSDALRKHPRYFDDLYCDLVASGEQSGALDKIFDRVALYK
EKSEALKSKIKKAMFYPIAVLVVALIVTSILLIFVVPQFQDIFAGFGAELPAFTLMVIAISEFMQEYWWIILIALFGFGY
AYKEALLKSKKLRDATDRAILKMPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILDIKAEVS
SGNQMNWAMRNSKIFPDMVIQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIIAMYLP
IFQLGAVI
Nucleotide
Download Length: 1227 bp
>NTDB_id=792831 PVK79_RS04020 WP_257325350.1 909851..911077(-) (pilC) [Pseudoalteromonas rhizosphaerae strain hCg-42]
ATGGCAAAGCAACCGGACAAAAAAGGATTTGATACTTTTGAATGGGTAGGCGTGAGTGCTCGCGGGAAGCGCCTTGAAGG
CGAAATGACAGGCGCAAGTATAGCTTTAGTCAAGGCCCAATTACGTAAACAAGGTATCACACCCTCAAAAGTTAAACGAA
AAGCCAAGCCTTTGTTCGGCGTGCGTATGCAGGCTATTACGCCAAAAGATATTGCTTTAGTTACGCGGCAAATTGCCACT
ATGTTAATGGCAGGTGTTCCCCTTATTCAATCAATCGAAATGATAGGCACCGGGTCAACAAACAAAAGCGTTACAAAGCT
AATGGAAACCGTCGGCGATGAAGTAAAAGCAGGTGGTGCTTTATCTGATGCACTGCGTAAACACCCTCGTTATTTTGATG
ACTTATATTGTGATTTAGTTGCCTCTGGTGAACAATCTGGCGCGCTGGATAAAATATTCGACCGCGTTGCCCTTTATAAA
GAAAAGTCAGAAGCACTGAAATCAAAAATTAAAAAAGCCATGTTCTACCCTATTGCTGTATTAGTAGTGGCTTTAATCGT
AACCTCAATCCTGCTTATTTTTGTAGTGCCACAATTTCAAGATATTTTTGCTGGTTTTGGTGCAGAACTCCCTGCATTTA
CTTTAATGGTCATTGCCATCTCTGAGTTTATGCAAGAATACTGGTGGATTATATTGATTGCGCTCTTTGGTTTTGGTTAC
GCTTATAAAGAAGCACTACTAAAAAGTAAAAAACTACGCGATGCCACCGATCGCGCTATTTTAAAAATGCCGGTAATTGG
TATGATTTTAAACAAAGCTGCAGTGGCACGTTATGCCCGTACGCTTTCGACCACTTTTGCGGCCGGTGTACCACTGGTTG
ATGCACTGGACTCAGCTGCTGGCGCTTCAGGTAACGCGGTTTACCGTTATGCTATTTTAGATATTAAAGCCGAGGTAAGC
TCAGGTAATCAAATGAACTGGGCTATGCGTAATTCAAAAATATTCCCCGATATGGTGATACAAATGGTAGCCATAGGTGA
AGAGTCAGGCTCTTTAGATGGTATGCTGGCAAAAGTCGCCACTATTTATGAGCAAGAAGTTGATGATGCAGTAGATGGCC
TATCGAGCTTATTAGAGCCGCTTATTATGGCGGTACTCGGCGTACTGGTTGGCGGTTTAATTATTGCCATGTACTTACCT
ATTTTCCAACTTGGTGCAGTTATATAA
ATGGCAAAGCAACCGGACAAAAAAGGATTTGATACTTTTGAATGGGTAGGCGTGAGTGCTCGCGGGAAGCGCCTTGAAGG
CGAAATGACAGGCGCAAGTATAGCTTTAGTCAAGGCCCAATTACGTAAACAAGGTATCACACCCTCAAAAGTTAAACGAA
AAGCCAAGCCTTTGTTCGGCGTGCGTATGCAGGCTATTACGCCAAAAGATATTGCTTTAGTTACGCGGCAAATTGCCACT
ATGTTAATGGCAGGTGTTCCCCTTATTCAATCAATCGAAATGATAGGCACCGGGTCAACAAACAAAAGCGTTACAAAGCT
AATGGAAACCGTCGGCGATGAAGTAAAAGCAGGTGGTGCTTTATCTGATGCACTGCGTAAACACCCTCGTTATTTTGATG
ACTTATATTGTGATTTAGTTGCCTCTGGTGAACAATCTGGCGCGCTGGATAAAATATTCGACCGCGTTGCCCTTTATAAA
GAAAAGTCAGAAGCACTGAAATCAAAAATTAAAAAAGCCATGTTCTACCCTATTGCTGTATTAGTAGTGGCTTTAATCGT
AACCTCAATCCTGCTTATTTTTGTAGTGCCACAATTTCAAGATATTTTTGCTGGTTTTGGTGCAGAACTCCCTGCATTTA
CTTTAATGGTCATTGCCATCTCTGAGTTTATGCAAGAATACTGGTGGATTATATTGATTGCGCTCTTTGGTTTTGGTTAC
GCTTATAAAGAAGCACTACTAAAAAGTAAAAAACTACGCGATGCCACCGATCGCGCTATTTTAAAAATGCCGGTAATTGG
TATGATTTTAAACAAAGCTGCAGTGGCACGTTATGCCCGTACGCTTTCGACCACTTTTGCGGCCGGTGTACCACTGGTTG
ATGCACTGGACTCAGCTGCTGGCGCTTCAGGTAACGCGGTTTACCGTTATGCTATTTTAGATATTAAAGCCGAGGTAAGC
TCAGGTAATCAAATGAACTGGGCTATGCGTAATTCAAAAATATTCCCCGATATGGTGATACAAATGGTAGCCATAGGTGA
AGAGTCAGGCTCTTTAGATGGTATGCTGGCAAAAGTCGCCACTATTTATGAGCAAGAAGTTGATGATGCAGTAGATGGCC
TATCGAGCTTATTAGAGCCGCTTATTATGGCGGTACTCGGCGTACTGGTTGGCGGTTTAATTATTGCCATGTACTTACCT
ATTTTCCAACTTGGTGCAGTTATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
62.879 |
97.059 |
0.61 |
| pilC | Acinetobacter baumannii D1279779 |
55.276 |
97.549 |
0.539 |
| pilC | Legionella pneumophila strain ERS1305867 |
55.164 |
97.304 |
0.537 |
| pilC | Acinetobacter baylyi ADP1 |
54.408 |
97.304 |
0.529 |
| pilC | Vibrio cholerae strain A1552 |
44.279 |
98.529 |
0.436 |
| pilG | Neisseria meningitidis 44/76-A |
43.909 |
96.569 |
0.424 |
| pilG | Neisseria gonorrhoeae MS11 |
43.655 |
96.569 |
0.422 |
| pilC | Vibrio campbellii strain DS40M4 |
41.855 |
97.794 |
0.409 |
| pilC | Thermus thermophilus HB27 |
36.935 |
97.549 |
0.36 |