Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PUP75_RS26890 Genome accession   NZ_CP118145
Coordinates   5977892..5979109 (+) Length   405 a.a.
NCBI ID   WP_274335232.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain ATCC 17417     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5972892..5984109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP75_RS26875 (PUP75_26875) - 5973349..5976267 (+) 2919 WP_274335231.1 DUF748 domain-containing protein -
  PUP75_RS26880 (PUP75_26880) - 5976470..5976826 (-) 357 WP_009045666.1 BON domain-containing protein -
  PUP75_RS26885 (PUP75_26885) - 5977112..5977528 (-) 417 WP_007924673.1 pilin -
  PUP75_RS26890 (PUP75_26890) pilC 5977892..5979109 (+) 1218 WP_274335232.1 type II secretion system F family protein Machinery gene
  PUP75_RS26895 (PUP75_26895) pilD 5979112..5979984 (+) 873 WP_123412472.1 prepilin peptidase Machinery gene
  PUP75_RS26900 (PUP75_26900) coaE 5979981..5980604 (+) 624 WP_009045669.1 dephospho-CoA kinase -
  PUP75_RS26905 (PUP75_26905) yacG 5980601..5980804 (+) 204 WP_009045670.1 DNA gyrase inhibitor YacG -
  PUP75_RS26910 (PUP75_26910) - 5980809..5981024 (-) 216 WP_009045671.1 hypothetical protein -
  PUP75_RS26915 (PUP75_26915) - 5981090..5981779 (-) 690 WP_009045672.1 energy-coupling factor ABC transporter permease -
  PUP75_RS26920 (PUP75_26920) - 5981776..5982243 (-) 468 WP_053262707.1 hypothetical protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44502.39 Da        Isoelectric Point: 10.4090

>NTDB_id=790556 PUP75_RS26890 WP_274335232.1 5977892..5979109(+) (pilC) [Pseudomonas chlororaphis strain ATCC 17417]
MAVKAAKVSVYLWEGTDRQGSKLRGELSGHTPSLIRAQLRKQGINPARVRKKPSSLLQRTPPIKARDISLFTRQLATLIK
AGVPLLQSFDIIAEGFDNPNMRKLMGELKQDIAAGSSFTSALRKRPRYFDELYCSLVDAGEQAGALETLLERVATYKEKS
ENLKTRIRKAMTYPLAVICVALVVTGILLVKVVPQFQSMFQGFGAQLPVFTQLVIALSEFVQHWWWLLVGALLLSVFGLR
HARRHSPRFRHWLDVGLLKLPLVAPLMYKSAVARYARTLSTTFAAGVPLVEALGSVAGATGNQVFKQAVNRIRQDVATGM
QLHFSMRASGIFPGMAIQMTAIGEESGALDGMLEKVAIHYEEEVDTLVDTLSSLMEPVIMVVLGTLVGGLVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=790556 PUP75_RS26890 WP_274335232.1 5977892..5979109(+) (pilC) [Pseudomonas chlororaphis strain ATCC 17417]
ATGGCGGTCAAAGCAGCAAAAGTCAGTGTTTACCTGTGGGAAGGCACCGACAGGCAAGGCAGCAAACTGCGCGGCGAATT
GAGCGGCCATACCCCCTCGCTGATCAGGGCCCAGTTGCGCAAGCAAGGCATCAACCCGGCCAGGGTCAGGAAGAAACCCA
GCTCGCTGTTGCAGCGCACGCCCCCGATCAAGGCCCGCGACATCAGCCTGTTCACCCGACAACTGGCGACCTTGATCAAG
GCCGGCGTGCCGCTGCTGCAATCGTTCGACATCATTGCCGAGGGCTTCGACAACCCGAACATGCGCAAACTGATGGGCGA
GCTGAAACAGGACATCGCCGCCGGCAGCAGCTTCACCAGCGCACTGCGCAAGAGGCCGCGGTACTTCGACGAGCTGTACT
GCAGCCTGGTGGATGCCGGCGAACAGGCCGGGGCCCTGGAAACCCTGCTGGAGCGGGTGGCGACCTACAAGGAAAAAAGC
GAAAACCTCAAGACGCGGATCCGCAAGGCCATGACTTATCCCCTGGCGGTGATCTGCGTGGCGCTGGTGGTCACGGGGAT
CCTGCTGGTCAAGGTGGTGCCGCAATTCCAGTCGATGTTCCAGGGCTTCGGCGCGCAATTGCCGGTGTTCACGCAACTGG
TCATCGCCCTCTCGGAATTCGTGCAGCACTGGTGGTGGCTGCTGGTGGGCGCGCTGTTGCTCAGTGTGTTCGGCCTGCGC
CATGCCCGCCGGCATTCACCACGCTTTCGCCACTGGCTGGACGTGGGCCTACTGAAACTGCCGTTGGTAGCGCCACTGAT
GTACAAGTCCGCGGTGGCCCGCTACGCCCGCACCTTGTCCACCACTTTCGCCGCCGGAGTGCCGCTGGTGGAGGCCCTGG
GCTCGGTGGCCGGGGCCACCGGCAACCAGGTGTTCAAGCAAGCGGTGAACCGCATCAGGCAGGACGTGGCGACCGGCATG
CAGTTGCATTTTTCCATGCGCGCCTCCGGCATCTTTCCCGGCATGGCCATCCAGATGACCGCCATCGGCGAAGAGTCCGG
GGCCCTGGACGGCATGCTGGAAAAGGTCGCGATCCATTATGAGGAAGAGGTCGATACCCTGGTCGACACCCTGAGCAGTC
TCATGGAACCCGTGATCATGGTAGTTTTGGGCACCCTCGTCGGCGGCCTGGTGGTCGCCATGTACTTACCCATCTTCCAA
CTCGGCACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

64.938

100

0.649
  pilC Acinetobacter baylyi ADP1

55.882

100

0.563
  pilC Acinetobacter baumannii D1279779

55.147

100

0.556
  pilC Legionella pneumophila strain ERS1305867

52.525

97.778

0.514
  pilG Neisseria gonorrhoeae MS11

41.542

99.259

0.412
  pilC Vibrio cholerae strain A1552

42.092

96.79

0.407
  pilG Neisseria meningitidis 44/76-A

40.796

99.259

0.405
  pilC Vibrio campbellii strain DS40M4

38.557

99.259

0.383