Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PUP72_RS04920 Genome accession   NZ_CP118134
Coordinates   1113607..1114815 (-) Length   402 a.a.
NCBI ID   WP_059398077.1    Uniprot ID   -
Organism   Pseudomonas synxantha strain ATCC 17413     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1108607..1119815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP72_RS04885 (PUP72_04885) - 1109940..1110113 (-) 174 WP_274357913.1 DUF3094 family protein -
  PUP72_RS04890 (PUP72_04890) - 1110202..1110831 (-) 630 WP_043049309.1 DUF1780 domain-containing protein -
  PUP72_RS04895 (PUP72_04895) - 1110961..1111650 (+) 690 WP_046070859.1 energy-coupling factor ABC transporter permease -
  PUP72_RS04900 (PUP72_04900) - 1111715..1111930 (+) 216 WP_003171680.1 hypothetical protein -
  PUP72_RS04905 (PUP72_04905) yacG 1111927..1112127 (-) 201 WP_043049311.1 DNA gyrase inhibitor YacG -
  PUP72_RS04910 (PUP72_04910) coaE 1112124..1112747 (-) 624 WP_046070860.1 dephospho-CoA kinase -
  PUP72_RS04915 (PUP72_04915) pilD 1112744..1113610 (-) 867 WP_274357914.1 prepilin peptidase Machinery gene
  PUP72_RS04920 (PUP72_04920) pilC 1113607..1114815 (-) 1209 WP_059398077.1 type II secretion system F family protein Machinery gene
  PUP72_RS04925 (PUP72_04925) - 1115017..1115430 (+) 414 WP_059398076.1 pilin -
  PUP72_RS04935 (PUP72_04935) - 1115717..1116022 (+) 306 WP_046070864.1 DUF6388 family protein -
  PUP72_RS04940 (PUP72_04940) nadC 1116141..1116989 (-) 849 WP_059398075.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PUP72_RS04945 (PUP72_04945) - 1117235..1119388 (+) 2154 WP_274357915.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43561.98 Da        Isoelectric Point: 10.1121

>NTDB_id=790259 PUP72_RS04920 WP_059398077.1 1113607..1114815(-) (pilC) [Pseudomonas synxantha strain ATCC 17413]
MNDTSTIYAWEGINRKGRRVSGQIAGNDLALIKAQLRQQGICPERVRKKPAPRPTFAPRILPADIALFTRQLATLLKAGI
PLLQAFDIIREGVENRQVRDLVEALKQQIASGNSLADALRLHPRYFDDLYCNLVSTGEQAGALELLLERIATHLEKSQRL
KARIKKAMTYPVAVLVVATLVSAVLLIHVVPQFQNLFAGVNGQLPGFTLAVIALSEFLQQAWWVLALGLGASLAGLRQAY
RAYPGFRHRLEAGLLKMPLAGKLLHNSAVARYARTLSTTFAAGVPLVQALGSVAGAVGNGPFKQAIERMRHDVSTGMQLN
QSMASSGLFPGMAIQMTAIGEESGTLDRMLEKVANHYEADVDTLVDNLTSLMEPLIMVVLGGIVGALVIALYLPVFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=790259 PUP72_RS04920 WP_059398077.1 1113607..1114815(-) (pilC) [Pseudomonas synxantha strain ATCC 17413]
ATGAATGACACATCAACGATCTACGCCTGGGAAGGCATCAACCGCAAGGGACGCAGGGTGTCCGGGCAAATTGCTGGCAA
TGACCTTGCGCTGATCAAGGCACAATTGCGCCAGCAAGGGATCTGCCCCGAGCGTGTGCGCAAAAAGCCTGCGCCACGGC
CGACATTCGCCCCACGTATATTGCCTGCGGATATCGCCCTGTTCACCCGTCAGTTGGCCACATTGCTCAAGGCCGGTATC
CCGCTGCTACAAGCCTTCGACATCATCAGAGAGGGCGTCGAGAACCGGCAGGTGCGTGACCTGGTCGAAGCCTTGAAACA
GCAGATCGCCAGTGGCAACAGCTTGGCCGATGCGCTGCGCCTACATCCCCGTTATTTCGATGACCTGTACTGCAACTTGG
TGTCCACCGGGGAACAGGCCGGCGCCCTGGAATTGCTGCTGGAGCGAATAGCGACTCACCTGGAGAAAAGCCAACGGCTC
AAAGCCAGGATCAAAAAGGCCATGACCTACCCTGTTGCGGTACTGGTGGTTGCCACGCTGGTCAGCGCGGTGCTGTTGAT
ACACGTAGTGCCGCAATTCCAGAACCTGTTCGCCGGGGTCAACGGCCAATTGCCCGGGTTTACCTTGGCAGTCATTGCCC
TGTCCGAATTCCTGCAACAGGCGTGGTGGGTGCTGGCGCTGGGCTTGGGTGCGTCGCTGGCAGGGCTTCGTCAGGCTTAC
CGTGCTTACCCAGGCTTTCGCCATCGGCTGGAAGCGGGTTTGTTGAAAATGCCCCTGGCAGGCAAACTGCTGCACAACTC
TGCCGTCGCTCGTTACGCCCGCACGCTTTCAACCACGTTCGCAGCGGGCGTGCCCCTCGTGCAGGCATTGGGCTCGGTGG
CCGGCGCCGTCGGCAATGGACCATTCAAACAGGCAATTGAACGTATGCGCCACGATGTATCCACAGGCATGCAATTGAAC
CAGTCCATGGCCAGCAGTGGCCTGTTTCCAGGCATGGCGATCCAGATGACGGCCATCGGTGAAGAATCCGGCACGCTGGA
CCGAATGTTGGAAAAAGTCGCGAACCACTACGAGGCGGACGTGGACACCTTGGTCGATAACCTCACCAGCCTGATGGAAC
CGCTGATCATGGTGGTACTGGGGGGCATTGTCGGGGCGTTGGTGATCGCCCTGTACCTGCCGGTCTTTCAACTGGGTACG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.071

98.507

0.562
  pilC Acinetobacter baylyi ADP1

50.505

98.507

0.498
  pilC Legionella pneumophila strain ERS1305867

48.615

98.756

0.48
  pilC Acinetobacter baumannii D1279779

48.354

98.259

0.475
  pilC Thermus thermophilus HB27

37.656

99.751

0.376
  pilC Vibrio cholerae strain A1552

38.071

98.01

0.373
  pilG Neisseria gonorrhoeae MS11

39.108

94.776

0.371
  pilG Neisseria meningitidis 44/76-A

38.32

94.776

0.363