Detailed information NTG0790258

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PUP72_RS04915
• Genome accession: NZ_CP118134
• Coordinates: 1112744..1113610 (-)
• Length: 288 a.a.
• NCBI ID: WP_274357914.1
• Uniprot ID: -
• Organism: Pseudomonas synxantha strain ATCC 17413
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1107744..1118610

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP72_RS04880 (PUP72_04880)	-	1108581..1109879 (-)	1299	WP_046070857.1	NAD(P)/FAD-dependent oxidoreductase	-
PUP72_RS04885 (PUP72_04885)	-	1109940..1110113 (-)	174	WP_274357913.1	DUF3094 family protein	-
PUP72_RS04890 (PUP72_04890)	-	1110202..1110831 (-)	630	WP_043049309.1	DUF1780 domain-containing protein	-
PUP72_RS04895 (PUP72_04895)	-	1110961..1111650 (+)	690	WP_046070859.1	energy-coupling factor ABC transporter permease	-
PUP72_RS04900 (PUP72_04900)	-	1111715..1111930 (+)	216	WP_003171680.1	hypothetical protein	-
PUP72_RS04905 (PUP72_04905)	yacG	1111927..1112127 (-)	201	WP_043049311.1	DNA gyrase inhibitor YacG	-
PUP72_RS04910 (PUP72_04910)	coaE	1112124..1112747 (-)	624	WP_046070860.1	dephospho-CoA kinase	-
PUP72_RS04915 (PUP72_04915)	pilD	1112744..1113610 (-)	867	WP_274357914.1	prepilin peptidase	Machinery gene
PUP72_RS04920 (PUP72_04920)	pilC	1113607..1114815 (-)	1209	WP_059398077.1	type II secretion system F family protein	Machinery gene
PUP72_RS04925 (PUP72_04925)	-	1115017..1115430 (+)	414	WP_059398076.1	pilin	-
PUP72_RS04935 (PUP72_04935)	-	1115717..1116022 (+)	306	WP_046070864.1	DUF6388 family protein	-
PUP72_RS04940 (PUP72_04940)	nadC	1116141..1116989 (-)	849	WP_059398075.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31800.19 Da
• Isoelectric Point: 8.3021

>NTDB_id=790258 PUP72_RS04915 WP_274357914.1 1112744..1113610(-) (pilD) [Pseudomonas synxantha strain ATCC 17413]
MILLLTERPWFFVAMALVPGLIVGSFLNVLVWRLPKMLEREWRAQAREILGLPAAPGGPPYNLMCPNSCCTRCEQPIRPW
ENIPLLSYLLLRGRCAHCRERISLRYPLTELACALVSATVAWHFGLGWQAGAVLLLSWGLLGLSLIDLDHQLLPDALVLP
LLWLGLILNSADLLATLPDALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGLI
AGLILLRLRKTQASAPLPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=790258 PUP72_RS04915 WP_274357914.1 1112744..1113610(-) (pilD) [Pseudomonas synxantha strain ATCC 17413]
TTGATCCTGCTGCTGACCGAACGGCCCTGGTTTTTTGTTGCCATGGCACTGGTGCCAGGCCTGATCGTCGGCAGTTTCCT
CAATGTGCTGGTGTGGCGACTGCCAAAAATGCTCGAGCGCGAATGGCGTGCCCAAGCCCGTGAGATCCTCGGCTTGCCTG
CTGCACCCGGCGGGCCGCCCTATAACCTGATGTGCCCGAATTCCTGCTGCACCCGTTGCGAACAGCCGATTCGGCCCTGG
GAAAATATCCCACTGCTCAGCTACCTGTTGCTCAGGGGGCGTTGTGCCCATTGCCGTGAGCGCATCAGCCTTCGTTATCC
CTTAACCGAGCTGGCCTGCGCGTTGGTCTCGGCCACCGTTGCCTGGCACTTCGGCCTTGGCTGGCAGGCCGGCGCGGTGC
TGCTGCTGAGCTGGGGCTTACTGGGCCTGAGCCTGATTGACCTCGACCATCAATTGTTGCCAGATGCGCTGGTGCTGCCG
CTGCTATGGCTGGGACTCATCCTCAACAGCGCCGACCTGCTGGCGACCTTGCCCGATGCGCTGTGGGGCGCGGTCATTGG
CTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGTAAAGATGGCATGGGCCATGGCGACTTCAAGT
TATTGGCATTGCTGGGAGCCTGGGGTGGGTGGCAGATACTGCCGATGACATTACTGATGGCCTCATTGCTGGGCCTGATC
GCCGGGTTGATCCTGCTGCGTTTGCGCAAGACCCAAGCGTCAGCTCCGCTGCCCTTTGGTCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-124)

• Type IV leader peptidase family (Peptidase_A24) (135-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.857	97.222	0.514
pilD	Vibrio campbellii strain DS40M4	50.534	97.569	0.493
pilD	Acinetobacter baumannii D1279779	48.718	94.792	0.462
pilD	Acinetobacter nosocomialis M2	48.718	94.792	0.462
pilD	Neisseria gonorrhoeae MS11	49.615	90.278	0.448