Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   PUW68_RS06330 Genome accession   NZ_CP118060
Coordinates   1260201..1260521 (+) Length   106 a.a.
NCBI ID   WP_011275670.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain VSI35     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1255201..1265521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW68_RS06300 (PUW68_06300) - 1255988..1256191 (+) 204 WP_070581604.1 YqgQ family protein -
  PUW68_RS06305 (PUW68_06305) - 1256188..1257174 (+) 987 WP_070581605.1 ROK family glucokinase -
  PUW68_RS06310 (PUW68_06310) - 1257174..1257497 (+) 324 WP_011275666.1 MTH1187 family thiamine-binding protein -
  PUW68_RS06315 (PUW68_06315) - 1257499..1258125 (+) 627 WP_070581606.1 MBL fold metallo-hydrolase -
  PUW68_RS06320 (PUW68_06320) comGA 1258177..1259151 (+) 975 WP_070581607.1 competence type IV pilus ATPase ComGA Machinery gene
  PUW68_RS06325 (PUW68_06325) comGB 1259123..1260187 (+) 1065 WP_070581608.1 competence type IV pilus assembly protein ComGB -
  PUW68_RS06330 (PUW68_06330) comGC 1260201..1260521 (+) 321 WP_011275670.1 competence type IV pilus major pilin ComGC Machinery gene
  PUW68_RS06335 (PUW68_06335) comGD 1260586..1260954 (+) 369 WP_240565900.1 competence type IV pilus minor pilin ComGD -
  PUW68_RS06340 (PUW68_06340) - 1260935..1261234 (+) 300 WP_011275672.1 hypothetical protein -
  PUW68_RS06345 (PUW68_06345) - 1261392..1261643 (+) 252 WP_240556425.1 hypothetical protein -
  PUW68_RS06350 (PUW68_06350) - 1261803..1262321 (+) 519 WP_070581611.1 shikimate kinase -
  PUW68_RS06355 (PUW68_06355) gcvT 1262511..1263602 (+) 1092 WP_070581612.1 glycine cleavage system aminomethyltransferase GcvT -
  PUW68_RS06360 (PUW68_06360) gcvPA 1263619..1264971 (+) 1353 WP_070581613.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11782.84 Da        Isoelectric Point: 8.5328

>NTDB_id=789721 PUW68_RS06330 WP_011275670.1 1260201..1260521(+) (comGC) [Staphylococcus haemolyticus strain VSI35]
MKNHFENLKKLKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHIQSTGCEAQVKMINSQIEAYTLKHNRTPSNINDLIND
GLIKEGQKQCRSGETITISNGEAIAN

Nucleotide


Download         Length: 321 bp        

>NTDB_id=789721 PUW68_RS06330 WP_011275670.1 1260201..1260521(+) (comGC) [Staphylococcus haemolyticus strain VSI35]
ATGAAAAATCACTTTGAAAATTTAAAAAAGTTAAAAGCTTTTACTCTAATAGAAATGTTATTAGTATTACTAATTATCAG
TGTATTACTAATATTAATTATTCCAAACATTGCAAAACAAACAGCACATATCCAGTCCACAGGTTGTGAAGCTCAAGTCA
AAATGATAAATAGTCAAATAGAAGCATATACTTTAAAACATAATCGTACACCTTCTAATATAAATGATCTTATCAATGAT
GGCCTTATAAAAGAAGGACAAAAACAATGCAGATCGGGAGAAACTATTACAATATCTAATGGTGAGGCTATTGCGAACTA
G

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

83.333

96.226

0.802
  comGC Staphylococcus aureus MW2

83.333

96.226

0.802
  comYC Streptococcus gordonii str. Challis substr. CH1

45.192

98.113

0.443
  comGC/cglC Streptococcus mitis SK321

45.745

88.679

0.406
  comGC/cglC Streptococcus pneumoniae TIGR4

44.681

88.679

0.396
  comGC/cglC Streptococcus mitis NCTC 12261

49.383

76.415

0.377
  comGC/cglC Streptococcus pneumoniae R6

48.148

76.415

0.368
  comGC/cglC Streptococcus pneumoniae D39

48.148

76.415

0.368
  comGC/cglC Streptococcus pneumoniae Rx1

48.148

76.415

0.368