Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PUN50_RS16590 Genome accession   NZ_CP117988
Coordinates   3598772..3599881 (-) Length   369 a.a.
NCBI ID   WP_274290682.1    Uniprot ID   A0AAQ2XX45
Organism   Vibrio campbellii strain 20220413_1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3593772..3604881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS16560 (PUN50_16560) hemF 3594300..3595217 (-) 918 WP_274290679.1 oxygen-dependent coproporphyrinogen oxidase -
  PUN50_RS16565 (PUN50_16565) - 3595252..3595809 (-) 558 WP_182053648.1 L-threonylcarbamoyladenylate synthase -
  PUN50_RS16570 (PUN50_16570) purE 3596009..3596494 (+) 486 WP_274290680.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PUN50_RS16575 (PUN50_16575) - 3596499..3597632 (+) 1134 WP_012126633.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PUN50_RS16580 (PUN50_16580) - 3597697..3598266 (-) 570 WP_274290681.1 type I DNA topoisomerase -
  PUN50_RS16585 (PUN50_16585) - 3598290..3598769 (-) 480 WP_005429833.1 DUF494 family protein -
  PUN50_RS16590 (PUN50_16590) dprA 3598772..3599881 (-) 1110 WP_274290682.1 DNA-processing protein DprA Machinery gene
  PUN50_RS16595 (PUN50_16595) - 3599865..3600959 (-) 1095 WP_274290683.1 LysM peptidoglycan-binding domain-containing protein -
  PUN50_RS16600 (PUN50_16600) def 3601098..3601616 (+) 519 WP_005450979.1 peptide deformylase -
  PUN50_RS16605 (PUN50_16605) fmt 3601650..3602597 (+) 948 WP_274290684.1 methionyl-tRNA formyltransferase -
  PUN50_RS16610 (PUN50_16610) rsmB 3602678..3603961 (+) 1284 WP_274290685.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39363.98 Da        Isoelectric Point: 5.5790

>NTDB_id=788979 PUN50_RS16590 WP_274290682.1 3598772..3599881(-) (dprA) [Vibrio campbellii strain 20220413_1]
MTPQNDIDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVQYSTEQLQLLGLTAKQLQAWSQVDKEVDACLTWVAASSHHH
ILTLADALYPPLLKQTVAPPPLLFAKGEASCLSQPQIAMVGSRNASVDGLQHARTFASDLVQHDLIVTSGLALGIDGHAH
DGALLAGGKTIAVLGSGLEQVYPARHRGLAQRVAENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIQNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=788979 PUN50_RS16590 WP_274290682.1 3598772..3599881(-) (dprA) [Vibrio campbellii strain 20220413_1]
ATGACACCACAAAATGATATTGATCTCGCTGCTTGGTTAAAGCTTAGTTGTTTACCGGGAATCGGTGGGGTCAAGATGAA
TAAGCTGCTCAGTAAAGATACGCCGAGCAATATTGTCCAATATTCCACGGAGCAGCTTCAGCTTTTAGGCTTAACGGCAA
AACAGTTGCAAGCATGGTCGCAGGTCGATAAAGAAGTCGATGCTTGTCTGACTTGGGTTGCAGCATCTTCTCATCATCAT
ATTCTTACTTTGGCGGATGCTTTGTATCCGCCACTTCTCAAACAAACCGTCGCACCGCCTCCTTTACTCTTTGCAAAAGG
AGAGGCGAGCTGTTTGTCTCAACCTCAAATAGCTATGGTTGGCAGCCGTAATGCCAGTGTGGATGGGCTACAACACGCAA
GAACTTTTGCATCTGACTTGGTGCAACACGATCTGATCGTCACTAGTGGCTTAGCATTGGGTATTGATGGCCATGCTCAT
GATGGTGCGCTGTTAGCTGGAGGTAAAACCATCGCAGTGCTTGGCTCGGGATTAGAACAAGTGTACCCAGCAAGACACCG
CGGCTTGGCGCAGCGAGTGGCTGAAAATGGAGCGCTTGTTTCAGAGTTTCGTCCAGATGCTAAGCCTCGCGCAGAAAACT
TTCCACGTCGTAATCGAATCATCAGTGGATTGTCACTGGGTGTTTTGGTGGTGGAAGCGGCTGAAAAAAGTGGCTCCTTG
ATTACGGCGCGTTATGCTTTAGAACAAGGTCGAGAAGTTTTCGCTCTGCCAGCTTCGATTAATGCACCCAACGCCAGTGG
CGGTAATCAATTGATTCAGAACGGGGCTTGTCTCGTACAAAATACTCAAGAGGTGCTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(307-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

99.187

100

0.992
  dprA Vibrio cholerae strain A1552

58.378

100

0.585
  dprA Glaesserella parasuis strain SC1401

47.453

100

0.48
  dprA Haemophilus influenzae Rd KW20

44.54

94.309

0.42
  dprA Legionella pneumophila strain ERS1305867

47.112

89.16

0.42
  dprA Neisseria meningitidis strain C311

37.34

100

0.396
  dprA Neisseria meningitidis MC58

37.34

100

0.396
  dprA Neisseria gonorrhoeae MS11

36.434

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

36.176

100

0.379