Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   PUN35_RS02335 Genome accession   NZ_CP117986
Coordinates   428321..429124 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus sp. N3378-2at     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 423321..434124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN35_RS02315 - 423431..424276 (+) 846 WP_031600677.1 TlyA family RNA methyltransferase -
  PUN35_RS02320 argR 424374..424823 (+) 450 WP_003230265.1 arginine repressor ArgR -
  PUN35_RS02325 recN 424860..426590 (+) 1731 WP_014480229.1 DNA repair protein RecN Machinery gene
  PUN35_RS02330 spoIVB 426765..428045 (+) 1281 WP_014480228.1 SpoIVB peptidase -
  PUN35_RS02335 spo0A 428321..429124 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  PUN35_RS02340 - 429589..430707 (-) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  PUN35_RS02345 - 430780..430932 (-) 153 WP_014480226.1 hypothetical protein -
  PUN35_RS02350 - 431240..431536 (+) 297 WP_014480225.1 hypothetical protein -
  PUN35_RS02355 - 431556..432176 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase family protein -
  PUN35_RS02360 - 432255..432986 (+) 732 WP_014480224.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=788883 PUN35_RS02335 WP_003226427.1 428321..429124(+) (spo0A) [Bacillus sp. N3378-2at]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=788883 PUN35_RS02335 WP_003226427.1 428321..429124(+) (spo0A) [Bacillus sp. N3378-2at]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1