Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PT012_RS10380 Genome accession   NZ_CP117820
Coordinates   2278267..2279469 (-) Length   400 a.a.
NCBI ID   WP_010894959.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain ICMP 8740     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2273267..2284469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT012_RS10360 (PT012_10360) - 2274488..2275165 (+) 678 WP_010894955.1 response regulator transcription factor -
  PT012_RS10365 (PT012_10365) - 2275158..2276495 (+) 1338 WP_027700147.1 HAMP domain-containing sensor histidine kinase -
  PT012_RS10370 (PT012_10370) coaE 2276762..2277385 (-) 624 WP_027700146.1 dephospho-CoA kinase -
  PT012_RS10375 (PT012_10375) - 2277397..2278260 (-) 864 WP_004084594.1 A24 family peptidase -
  PT012_RS10380 (PT012_10380) pilC 2278267..2279469 (-) 1203 WP_010894959.1 type II secretion system F family protein Machinery gene
  PT012_RS10385 (PT012_10385) - 2279910..2280356 (+) 447 WP_027700144.1 pilin -
  PT012_RS10390 (PT012_10390) - 2280601..2280828 (-) 228 WP_012338102.1 hypothetical protein -
  PT012_RS10395 (PT012_10395) - 2281661..2282101 (+) 441 WP_012338104.1 pilin -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 44112.05 Da        Isoelectric Point: 10.1299

>NTDB_id=787773 PT012_RS10380 WP_010894959.1 2278267..2279469(-) (pilC) [Xylella fastidiosa subsp. multiplex strain ICMP 8740]
MTSFLWEGTDKRGVKIKGEQTARTANLLRAELRRQGITPLVVKPRPKPLFGQAGKRITPKDIAFFSRQMATMMKAGVPIV
GALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKHPVYFDELYRNLVRAGERAGVLETVLDTIASYKENIEALKGK
IRKALFYPVAIVAVALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWWAMLALLIVVIGGGLFTYKRS
ESMQHLLDRLVLKFPVIGAIMHNSALARFSRTTAVTFRAGVPLVEALGIVAGATGNKVYSDAVFRMRDDVSVGYSINMSM
RQVGIFPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLASVVG

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=787773 PT012_RS10380 WP_010894959.1 2278267..2279469(-) (pilC) [Xylella fastidiosa subsp. multiplex strain ICMP 8740]
TTGACTTCGTTTCTTTGGGAAGGGACGGATAAGCGCGGTGTCAAAATTAAGGGGGAACAGACAGCACGCACGGCGAACTT
GTTGCGTGCTGAGCTACGTCGTCAAGGCATCACGCCTCTTGTGGTTAAGCCTAGGCCTAAGCCGCTGTTTGGTCAGGCAG
GGAAGCGGATCACTCCGAAGGACATTGCCTTTTTTAGTCGCCAGATGGCGACGATGATGAAAGCCGGTGTCCCCATTGTC
GGGGCGTTGGATATTTTGGCCAACGGTCAGAAGAATCCGCGTATGCGTACGATGGTCAATCAAATTAAAAATGATATTGA
AGGCGGTTCCTCGCTGTATGAGTCAATCAGCAAGCACCCTGTATATTTCGATGAGCTTTATCGCAATCTGGTCAGGGCTG
GCGAGCGCGCGGGCGTGCTGGAGACGGTGCTTGATACGATTGCTAGTTATAAGGAGAACATTGAGGCTCTGAAGGGAAAA
ATTCGCAAGGCGTTGTTTTATCCTGTTGCTATTGTCGCGGTTGCTCTCATTGTTAGTTCGATTTTATTGATATACGTGGT
GCCGCAGTTCGAGGATGTGTTCAAAGGATTCGGAGCGGAATTGCCTGCATTCACTCAGATGATTGTCAATTTTTCCAACT
TCATGCAGCGGTGGTGGTGGGCCATGTTGGCTCTGCTGATTGTTGTTATCGGTGGTGGTTTGTTTACTTACAAGCGCTCT
GAATCCATGCAACATCTGCTGGATAGGTTGGTGTTGAAGTTCCCAGTGATCGGGGCAATTATGCACAATAGCGCGCTTGC
TCGGTTCTCGCGAACAACAGCTGTTACTTTCCGTGCAGGGGTGCCACTGGTAGAGGCATTGGGTATCGTTGCTGGGGCAA
CCGGCAATAAGGTTTATTCGGATGCTGTGTTCCGCATGCGTGATGATGTCTCAGTTGGCTATTCTATAAATATGTCAATG
AGGCAAGTTGGTATCTTCCCTCATATGGTGGTGCAGATGGCTTCCATCGGTGAGGAAGCCGGTGCTCTGGACGCGATGCT
GTTTAAAGTCGCTGAGTACTATGAACAGGAAGTCAGTAACGCGGTCGATGGACTCAGCAGTTTGCTGGAACCGCTGATCA
TGGTCTTTATTGGTGTTATCGTCGGCGGCATGGTCATTGCTATGTATTTGCCGATCTTTAAGCTTGCTTCTGTCGTTGGA
TAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(269-391)

Type II secretion system (T2SS), protein F (T2SSF)

(65-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.5

100

0.545
  pilC Legionella pneumophila strain ERS1305867

52.099

100

0.528
  pilC Acinetobacter baylyi ADP1

51

100

0.51
  pilC Acinetobacter baumannii D1279779

50.5

100

0.505
  pilG Neisseria gonorrhoeae MS11

43.467

99.5

0.432
  pilG Neisseria meningitidis 44/76-A

42.965

99.5

0.428
  pilC Vibrio cholerae strain A1552

40.943

100

0.413
  pilC Vibrio campbellii strain DS40M4

40.399

100

0.405
  pilC Thermus thermophilus HB27

37.352

100

0.395