Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG299_RS25810 Genome accession   NZ_CP130720
Coordinates   5677961..5678632 (+) Length   223 a.a.
NCBI ID   WP_323179072.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01296     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5672961..5683632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG299_RS25780 (OG299_25805) - 5673617..5673817 (+) 201 WP_327362771.1 excisionase family DNA-binding protein -
  OG299_RS25785 (OG299_25810) - 5673976..5674980 (+) 1005 WP_327362772.1 site-specific integrase -
  OG299_RS25800 (OG299_25825) tig 5675530..5676933 (+) 1404 WP_266629262.1 trigger factor -
  OG299_RS25805 (OG299_25830) clpP 5677257..5677874 (+) 618 WP_266629264.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG299_RS25810 (OG299_25835) clpP 5677961..5678632 (+) 672 WP_323179072.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG299_RS25815 (OG299_25840) clpX 5678786..5680072 (+) 1287 WP_030159377.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG299_RS25820 (OG299_25845) - 5680186..5680398 (+) 213 WP_327362773.1 hypothetical protein -
  OG299_RS25825 (OG299_25850) - 5680454..5681383 (-) 930 WP_266629271.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24586.05 Da        Isoelectric Point: 4.9265

>NTDB_id=787289 OG299_RS25810 WP_323179072.1 5677961..5678632(+) (clpP) [Streptomyces sp. NBC_01296]
MVNTQMHMNNLSPASGLYTGAPVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLS
DLEIAAREILRMRDQLETMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIVSTRKNSH

Nucleotide


Download         Length: 672 bp        

>NTDB_id=787289 OG299_RS25810 WP_323179072.1 5677961..5678632(+) (clpP) [Streptomyces sp. NBC_01296]
ATGGTGAACACCCAGATGCACATGAACAACCTCTCTCCCGCGAGCGGCCTCTACACCGGCGCACCGGTGGACAACCGCTA
CGTCGTCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCCATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTGGCCGCCGGCACCC
CCGGCAAGCGCATGGCGCTGCCGAACGCCCGTGTGCTGATCCACCAGCCGTCGGGCGGCACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAGGGAGATCCTGCGCATGCGTGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACCACGCC
GATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCGCTCGCGTACGGCCTGATCGACC
AGATCGTCTCGACCCGCAAGAACTCCCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

85.202

0.448
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

84.305

0.417
  clpP Streptococcus thermophilus LMD-9

45.876

86.996

0.399
  clpP Streptococcus pyogenes JRS4

45.876

86.996

0.399
  clpP Streptococcus pyogenes MGAS315

45.876

86.996

0.399
  clpP Streptococcus thermophilus LMG 18311

45.876

86.996

0.399
  clpP Streptococcus mutans UA159

46.316

85.202

0.395
  clpP Lactococcus lactis subsp. cremoris KW2

46.073

85.65

0.395
  clpP Streptococcus pneumoniae D39

45.55

85.65

0.39
  clpP Streptococcus pneumoniae TIGR4

45.55

85.65

0.39
  clpP Streptococcus pneumoniae R6

45.55

85.65

0.39
  clpP Streptococcus pneumoniae Rx1

45.55

85.65

0.39
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

85.65

0.386