NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG299_RS25805	Genome accession	NZ_CP130720
Coordinates	5677257..5677874 (+)	Length	205 a.a.
NCBI ID	WP_266629264.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_01296
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5672257..5682874

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG299_RS25775 (OG299_25800)	repSA	5672402..5673624 (+)	1223	Protein_5087	replication initiator protein RepSA	-
OG299_RS25780 (OG299_25805)	-	5673617..5673817 (+)	201	WP_327362771.1	excisionase family DNA-binding protein	-
OG299_RS25785 (OG299_25810)	-	5673976..5674980 (+)	1005	WP_327362772.1	site-specific integrase	-
OG299_RS25800 (OG299_25825)	tig	5675530..5676933 (+)	1404	WP_266629262.1	trigger factor	-
OG299_RS25805 (OG299_25830)	clpP	5677257..5677874 (+)	618	WP_266629264.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG299_RS25810 (OG299_25835)	clpP	5677961..5678632 (+)	672	WP_323179072.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG299_RS25815 (OG299_25840)	clpX	5678786..5680072 (+)	1287	WP_030159377.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG299_RS25820 (OG299_25845)	-	5680186..5680398 (+)	213	WP_327362773.1	hypothetical protein	-
OG299_RS25825 (OG299_25850)	-	5680454..5681383 (-)	930	WP_266629271.1	hypothetical protein	-

Sequence

Protein

Download Length: 205 a.a. Molecular weight: 21629.54 Da Isoelectric Point: 4.6648

                                >NTDB_id=787288 OG299_RS25805 WP_266629264.1 5677257..5677874(+) (clpP) [Streptomyces sp. NBC_01296]

MTNLKPYAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDDIANKITAQLLLLAAEPDKDIYLYINSPGGSVTAGMAVYD

TMQYIPNDVVTIGMGMAASMGQFLLTGGAQGKRFALPNTDILMHQGSAGIGGTASDIKIQAEYLLRTKQRMAEITAHHSG

QTVEAIIRDGDRDRWFTAEEAKGYGLIDEIISAASLVPGGGGTGA

Nucleotide

Download Length: 618 bp

                                >NTDB_id=787288 OG299_RS25805 WP_266629264.1 5677257..5677874(+) (clpP) [Streptomyces sp. NBC_01296]

GTGACGAATCTGAAGCCTTACGCCGCGGGTGAGCCGTCCATCGGTGGCGGCCTCGGCGACCATGTCTACAACCGGCTGCT

CGGCGAGCGCATCATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACGGCGCAGCTCCTCCTCCTGG

CCGCGGAGCCGGATAAGGACATCTACCTGTACATCAACAGCCCCGGCGGCTCGGTGACGGCGGGCATGGCGGTCTACGAC

ACCATGCAGTACATCCCGAACGACGTCGTCACCATCGGCATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTCACCGG

CGGCGCCCAGGGCAAGCGCTTCGCGCTCCCGAACACCGACATCCTGATGCACCAGGGTTCCGCCGGCATCGGTGGCACCG

CCTCGGACATCAAGATCCAGGCCGAGTACCTGCTGCGCACGAAGCAGCGCATGGCAGAGATCACCGCCCACCACTCCGGC

CAGACCGTGGAGGCGATCATCCGCGACGGCGACCGCGACCGCTGGTTCACCGCGGAGGAGGCCAAGGGGTACGGCCTCAT

CGACGAGATCATCTCCGCCGCGTCGCTGGTCCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	51.832	93.171	0.483
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.579	92.683	0.478
clpP	Lactococcus lactis subsp. cremoris KW2	50.265	92.195	0.463
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	49.735	92.195	0.459
clpP	Streptococcus mutans UA159	51.685	86.829	0.449
clpP	Streptococcus pneumoniae TIGR4	50.562	86.829	0.439
clpP	Streptococcus pneumoniae Rx1	50.562	86.829	0.439
clpP	Streptococcus pneumoniae D39	50.562	86.829	0.439
clpP	Streptococcus pneumoniae R6	50.562	86.829	0.439
clpP	Streptococcus pyogenes JRS4	50	86.829	0.434
clpP	Streptococcus pyogenes MGAS315	50	86.829	0.434
clpP	Streptococcus thermophilus LMD-9	49.438	86.829	0.429
clpP	Streptococcus thermophilus LMG 18311	49.438	86.829	0.429

Detailed information NTG0787288