Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG736_RS16215 Genome accession   NZ_CP130718
Coordinates   3626828..3627433 (-) Length   201 a.a.
NCBI ID   WP_028806515.1    Uniprot ID   A0A6M4XFM7
Organism   Streptomyces sp. NBC_01334     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3621828..3632433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG736_RS16200 (OG736_16185) - 3623229..3624215 (+) 987 WP_327183077.1 hypothetical protein -
  OG736_RS16205 (OG736_16190) clpX 3624291..3625580 (-) 1290 WP_020127826.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG736_RS16210 (OG736_16195) clpP 3625762..3626442 (-) 681 WP_020127827.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG736_RS16215 (OG736_16200) clpP 3626828..3627433 (-) 606 WP_028806515.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG736_RS16220 (OG736_16205) tig 3627948..3629321 (-) 1374 WP_327183078.1 trigger factor -
  OG736_RS16235 (OG736_16220) - 3630000..3630194 (-) 195 WP_030779494.1 hypothetical protein -
  OG736_RS16240 (OG736_16225) - 3630598..3631815 (+) 1218 WP_327183079.1 acyltransferase family protein -
  OG736_RS16245 (OG736_16230) - 3631823..3632281 (-) 459 WP_327183080.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21186.06 Da        Isoelectric Point: 4.6663

>NTDB_id=787173 OG736_RS16215 WP_028806515.1 3626828..3627433(-) (clpP) [Streptomyces sp. NBC_01334]
MPTAAGDPIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQFI
KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTVEQ
VTRDSDRDRWFDAFEAKEYGLIDDVIPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=787173 OG736_RS16215 WP_028806515.1 3626828..3627433(-) (clpP) [Streptomyces sp. NBC_01334]
ATGCCCACAGCCGCCGGCGACCCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGGCGGTCGACGACGACATCGCCAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCCGATCCGGACA
AGGACATCTACCTGTACATCAACAGCCCCGGCGGTTCGATCACGGCCGGCATGGCGATCTACGACACGATGCAGTTCATC
AAGAACGACGTGGTGACCATCGCCATGGGTCTCGCGGCGTCCATGGGTCAGTTCCTGCTCAGCGCGGGCACGCCCGGCAA
GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGCCTGGCGGGCTCGGCCTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTGACCTCCCAGCACACCGGCCAGACGGTCGAGCAG
GTCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCGTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCATCCC
GACGGCCGCCGGCATGCCGGGCGGCGGCGGCACCGGGGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4XFM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.615

93.035

0.517
  clpP Lactococcus lactis subsp. cremoris KW2

51.323

94.03

0.483
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.794

94.03

0.478
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.598

86.567

0.473
  clpP Streptococcus mutans UA159

54.913

86.07

0.473
  clpP Streptococcus pyogenes MGAS315

52.023

86.07

0.448
  clpP Streptococcus pyogenes JRS4

52.023

86.07

0.448
  clpP Streptococcus thermophilus LMG 18311

52.023

86.07

0.448
  clpP Streptococcus thermophilus LMD-9

52.023

86.07

0.448
  clpP Streptococcus pneumoniae Rx1

51.445

86.07

0.443
  clpP Streptococcus pneumoniae D39

51.445

86.07

0.443
  clpP Streptococcus pneumoniae R6

51.445

86.07

0.443
  clpP Streptococcus pneumoniae TIGR4

51.445

86.07

0.443