Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PSR14_RS19475 Genome accession   NZ_CP117702
Coordinates   3701324..3702562 (-) Length   412 a.a.
NCBI ID   WP_061131608.1    Uniprot ID   A0AAW5YMM8
Organism   Bacillus sp. A01H     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3696324..3707562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR14_RS19450 (PSR14_19445) spoVS 3696402..3696662 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  PSR14_RS19455 (PSR14_19450) - 3696811..3697605 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  PSR14_RS19460 (PSR14_19455) rny 3697770..3699335 (-) 1566 WP_000099355.1 ribonuclease Y -
  PSR14_RS19465 (PSR14_19460) - 3699821..3700243 (-) 423 Protein_3776 recombinase RecA -
  PSR14_RS19470 (PSR14_19465) recA 3700570..3701178 (-) 609 Protein_3777 recombinase RecA -
  PSR14_RS19475 (PSR14_19470) cinA 3701324..3702562 (-) 1239 WP_061131608.1 competence/damage-inducible protein CinA Machinery gene
  PSR14_RS19480 (PSR14_19475) pgsA 3702583..3703161 (-) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PSR14_RS19485 (PSR14_19480) - 3703225..3704136 (-) 912 WP_098486976.1 helix-turn-helix domain-containing protein -
  PSR14_RS19490 (PSR14_19485) - 3704158..3704943 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  PSR14_RS19495 (PSR14_19490) - 3705083..3705331 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  PSR14_RS19500 (PSR14_19495) ymfI 3705407..3706120 (-) 714 WP_000759622.1 elongation factor P 5-aminopentanone reductase -
  PSR14_RS19505 (PSR14_19500) yfmH 3706224..3707510 (-) 1287 WP_000411945.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45447.69 Da        Isoelectric Point: 5.2165

>NTDB_id=787136 PSR14_RS19475 WP_061131608.1 3701324..3702562(-) (cinA) [Bacillus sp. A01H]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNAHEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVRELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=787136 PSR14_RS19475 WP_061131608.1 3701324..3702562(-) (cinA) [Bacillus sp. A01H]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACGAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGACATGCTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTGGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCGACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCGATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATCGCCCCGCTTGCCAATG
ATGGAGAAGTGACATTACGTTTAACGGCTAAACATCAAAATGCTCATGAAGCGGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTTGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTACATTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTTGGTAATCAAGTAACAGAAAACGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTACCATAATGATGTGAAGCAACATGTATTACATGTACCTGAGGAAGTC
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAGAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACTGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.494

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.481
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.778

100

0.476
  cinA Streptococcus pneumoniae D39

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.813

98.544

0.451
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381