Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHB58_RS15820 Genome accession   NZ_CP130716
Coordinates   3533208..3533885 (-) Length   225 a.a.
NCBI ID   WP_306822805.1    Uniprot ID   A0ABV6TRF2
Organism   Streptomyces sp. NBC_00150     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3528208..3538885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB58_RS15810 (OHB58_15760) - 3530747..3531685 (+) 939 WP_371652717.1 hypothetical protein -
  OHB58_RS15815 (OHB58_15765) clpX 3531759..3533051 (-) 1293 WP_371652718.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHB58_RS15820 (OHB58_15770) clpP 3533208..3533885 (-) 678 WP_306822805.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB58_RS15825 (OHB58_15775) clpP 3533967..3534584 (-) 618 WP_361386536.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB58_RS15830 (OHB58_15780) tig 3534917..3536305 (-) 1389 WP_371652719.1 trigger factor -
  OHB58_RS15845 (OHB58_15795) - 3536913..3537107 (-) 195 WP_101388310.1 hypothetical protein -
  OHB58_RS15850 (OHB58_15800) - 3537236..3537673 (-) 438 WP_371652720.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24669.03 Da        Isoelectric Point: 4.5163

>NTDB_id=787083 OHB58_RS15820 WP_306822805.1 3533208..3533885(-) (clpP) [Streptomyces sp. NBC_00150]
MVNPDMQNNLSASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPD
RDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLSDL
EIAANEILRMRSQLEEMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLVDQIVSTRKTTSAAAA

Nucleotide


Download         Length: 678 bp        

>NTDB_id=787083 OHB58_RS15820 WP_306822805.1 3533208..3533885(-) (clpP) [Streptomyces sp. NBC_00150]
ATGGTGAACCCCGACATGCAGAACAACCTCTCCGCAAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTACATCGT
GCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGATCT
TCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGAC
CGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACGGCCCTCACGGCCATCTACGACACGATGCAGTTCGT
GAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTGCTGCTCGCCGCGGGCACCCCCGGCA
AGCGCATGGCGCTGCCCAACGCGCGCGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGCGAGCAGCTCTCCGACCTG
GAGATCGCGGCCAACGAGATCCTGCGCATGCGCAGCCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCCATCGA
GAAGATCCGGGACGACATCGAGCGGGACAAGATCCTCACCGCCGAGGACGCCCTGGCGTACGGCCTGGTCGACCAGATCG
TGTCGACCCGCAAGACGACGTCGGCCGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(36-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

84.444

0.427
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.619

84

0.4
  clpP Streptococcus thermophilus LMD-9

44.845

86.222

0.387
  clpP Streptococcus thermophilus LMG 18311

44.845

86.222

0.387
  clpP Streptococcus pyogenes MGAS315

45.789

84.444

0.387
  clpP Streptococcus pyogenes JRS4

45.789

84.444

0.387
  clpP Streptococcus mutans UA159

45.263

84.444

0.382
  clpP Streptococcus pneumoniae Rx1

44.503

84.889

0.378
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.889

0.378
  clpP Streptococcus pneumoniae R6

44.503

84.889

0.378
  clpP Streptococcus pneumoniae TIGR4

44.503

84.889

0.378
  clpP Streptococcus pneumoniae D39

44.503

84.889

0.378
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.889

0.373