Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PSR59_RS08045 Genome accession   NZ_CP117692
Coordinates   1629787..1631025 (+) Length   412 a.a.
NCBI ID   WP_273744791.1    Uniprot ID   -
Organism   Ligilactobacillus ruminis strain CACC888     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1624787..1636025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR59_RS08025 (PSR59_08025) yfmH 1625984..1627288 (+) 1305 WP_046921131.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  PSR59_RS08030 (PSR59_08030) ymfI 1627285..1628013 (+) 729 WP_080926539.1 elongation factor P 5-aminopentanone reductase -
  PSR59_RS08035 (PSR59_08035) - 1628118..1629005 (+) 888 WP_022280687.1 helix-turn-helix domain-containing protein -
  PSR59_RS08040 (PSR59_08040) pgsA 1629056..1629643 (+) 588 WP_039121062.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PSR59_RS08045 (PSR59_08045) cinA 1629787..1631025 (+) 1239 WP_273744791.1 competence/damage-inducible protein A Machinery gene
  PSR59_RS08050 (PSR59_08050) recA 1631143..1632231 (+) 1089 WP_273744792.1 recombinase RecA Machinery gene
  PSR59_RS08055 (PSR59_08055) rny 1632565..1634121 (+) 1557 WP_420704751.1 ribonuclease Y -
  PSR59_RS08060 (PSR59_08060) - 1634333..1634569 (+) 237 WP_014073291.1 hypothetical protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45402.34 Da        Isoelectric Point: 4.7909

>NTDB_id=787036 PSR59_RS08045 WP_273744791.1 1629787..1631025(+) (cinA) [Ligilactobacillus ruminis strain CACC888]
MHAEVISVGTEILLGQITDTNSTFISQRLAELGIDVYFKTVVGDNEKRLLQALEIASGRSDIVILSGGLGPTKDDLTKQT
VAKFLNCGLLTDKDALEYIEEYYRQNKRKMTDNNLLQAKYLEGSVSLPNESGMAVGSYYQNQNGPDFILLPGPPSEMRPM
FDKQVMHRLKENYAREHLLFSRVLRFYGIGESQLVTELDDLINGQTNPTIAPYAKVGEVTLRLTAQADSKESAKEILDEA
EQVISKRVGQYLYGYGDDNSLPKVVVEKLKQKGLTVSASESLTGGSFQKAVTDIAGSSHIFPGGFVTYSASAKENLLDIP
KEIIIENGVVSEATAKWMAERTRIKMDTDFGVSFTGVAGPDTLEGNPAGTVWIGISQRDRQTAAFEYHFYGDRDAVRIRS
VLAGFDLINNEL

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=787036 PSR59_RS08045 WP_273744791.1 1629787..1631025(+) (cinA) [Ligilactobacillus ruminis strain CACC888]
ATGCATGCAGAAGTTATTTCGGTCGGAACAGAAATTTTGTTAGGCCAAATTACGGATACAAACTCGACTTTTATCAGCCA
ACGCTTGGCCGAACTGGGGATTGACGTTTATTTTAAAACGGTTGTCGGGGACAATGAAAAAAGACTGCTTCAAGCTTTGG
AGATTGCTTCAGGAAGGTCTGACATTGTCATTTTATCCGGTGGACTCGGGCCGACAAAAGATGACCTTACGAAGCAAACC
GTAGCCAAATTTTTAAATTGCGGACTTTTGACGGATAAGGATGCTTTAGAGTACATTGAGGAGTATTATCGTCAAAATAA
GCGGAAAATGACCGATAACAATCTGTTGCAGGCAAAATATCTCGAGGGTTCGGTTTCGCTTCCGAATGAAAGCGGCATGG
CAGTAGGCAGCTATTATCAAAATCAAAACGGTCCTGACTTTATTTTGCTCCCCGGGCCTCCAAGCGAAATGCGCCCCATG
TTTGACAAGCAAGTAATGCACAGATTGAAAGAAAACTATGCAAGAGAACATCTGCTTTTTTCACGAGTTTTGAGATTTTA
TGGTATTGGCGAATCACAATTGGTGACTGAATTGGATGATTTGATCAACGGACAAACGAATCCGACGATTGCGCCTTACG
CTAAAGTTGGCGAGGTCACGCTTCGTTTGACTGCTCAGGCAGATTCAAAAGAAAGCGCAAAAGAAATTCTTGATGAAGCG
GAGCAAGTTATTTCGAAACGCGTGGGTCAATATCTTTATGGGTATGGCGATGACAACAGTCTTCCGAAGGTTGTCGTTGA
AAAACTAAAACAAAAAGGATTGACGGTTTCCGCTTCTGAAAGTTTAACTGGCGGTTCATTCCAGAAAGCAGTTACGGACA
TTGCCGGTTCTTCACATATTTTTCCCGGTGGATTCGTGACCTATTCTGCTTCCGCCAAGGAAAACCTGTTGGACATCCCG
AAGGAAATAATTATTGAAAACGGTGTCGTCAGCGAAGCAACCGCAAAGTGGATGGCTGAACGAACAAGAATCAAAATGGA
TACGGATTTTGGCGTTTCATTTACGGGCGTTGCCGGGCCTGATACGTTGGAGGGAAATCCCGCAGGAACTGTTTGGATCG
GGATATCGCAGCGAGACAGGCAGACTGCTGCTTTTGAATATCATTTTTATGGGGATCGAGATGCGGTTCGCATTCGCAGC
GTTTTAGCCGGATTCGACCTGATTAACAATGAACTATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

52.494

100

0.536
  cinA Streptococcus mitis SK321

52.494

100

0.536
  cinA Streptococcus pneumoniae TIGR4

51.544

100

0.527
  cinA Streptococcus mutans UA159

51.923

100

0.524
  cinA Streptococcus pneumoniae Rx1

51.306

100

0.524
  cinA Streptococcus pneumoniae R6

51.306

100

0.524
  cinA Streptococcus pneumoniae D39

51.069

100

0.522
  cinA Bacillus subtilis subsp. subtilis str. 168

48.649

98.786

0.481
  cinA Streptococcus suis isolate S10

42.043

100

0.43