Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG202_RS17395 Genome accession   NZ_CP130714
Coordinates   3968522..3969130 (-) Length   202 a.a.
NCBI ID   WP_189709844.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00310     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3963522..3974130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG202_RS17380 (OG202_17390) - 3965093..3966043 (+) 951 WP_327729709.1 hypothetical protein -
  OG202_RS17385 (OG202_17395) clpX 3966209..3967495 (-) 1287 WP_005479362.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG202_RS17390 (OG202_17400) clpP 3967699..3968379 (-) 681 WP_326582804.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG202_RS17395 (OG202_17405) clpP 3968522..3969130 (-) 609 WP_189709844.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG202_RS17400 (OG202_17410) tig 3969535..3970926 (-) 1392 WP_326582803.1 trigger factor -
  OG202_RS17415 (OG202_17425) - 3971555..3971749 (-) 195 WP_033526477.1 hypothetical protein -
  OG202_RS17420 (OG202_17430) - 3972329..3973531 (+) 1203 WP_326582802.1 acyltransferase family protein -
  OG202_RS17425 (OG202_17435) - 3973550..3974035 (-) 486 WP_327729708.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21375.28 Da        Isoelectric Point: 4.6747

>NTDB_id=786916 OG202_RS17395 WP_189709844.1 3968522..3969130(-) (clpP) [Streptomyces sp. NBC_00310]
MPYAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQF
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTVE
QVTRDSDRDRWFDAFEAKEYGLIDDVIPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=786916 OG202_RS17395 WP_189709844.1 3968522..3969130(-) (clpP) [Streptomyces sp. NBC_00310]
ATGCCCTACGCCGCCGGCGAGCCTTCCATCGGCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTTGGCGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATTGCCAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCGGACCCGG
ACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACGATGCAGTTC
ATCAAGAACGACGTGGTGACCATCGCCATGGGCCTCGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCGGGCACCCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCGTCCGCCGGTCTGGCCGGCTCGGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCGGAGCTCACCTCCCAGCACACGGGTCAGACCGTCGAG
CAGGTGACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCAT
CCCCACGGCCGCCGGCATGCCGGGCGGCGGCGGTACCGGGGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

58.48

84.653

0.495
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.356

94.554

0.495
  clpP Lactococcus lactis subsp. cremoris KW2

53.261

91.089

0.485
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.717

91.089

0.48
  clpP Streptococcus mutans UA159

55.491

85.644

0.475
  clpP Streptococcus pyogenes MGAS315

52.601

85.644

0.45
  clpP Streptococcus pyogenes JRS4

52.601

85.644

0.45
  clpP Streptococcus thermophilus LMG 18311

52.601

85.644

0.45
  clpP Streptococcus thermophilus LMD-9

52.601

85.644

0.45
  clpP Streptococcus pneumoniae Rx1

52.023

85.644

0.446
  clpP Streptococcus pneumoniae D39

52.023

85.644

0.446
  clpP Streptococcus pneumoniae R6

52.023

85.644

0.446
  clpP Streptococcus pneumoniae TIGR4

52.023

85.644

0.446