Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH68_RS04025 Genome accession   NZ_CP117464
Coordinates   910016..911224 (-) Length   402 a.a.
NCBI ID   WP_305434610.1    Uniprot ID   -
Organism   Pseudomonas lurida strain FP1465     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 905016..916224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH68_RS03985 (PSH68_03985) - 905934..906107 (-) 174 WP_016976295.1 DUF3094 family protein -
  PSH68_RS03990 (PSH68_03990) - 906162..906791 (-) 630 WP_010213242.1 DUF1780 domain-containing protein -
  PSH68_RS03995 (PSH68_03995) - 906895..907362 (+) 468 WP_034102088.1 hypothetical protein -
  PSH68_RS04000 (PSH68_04000) - 907359..908048 (+) 690 WP_069021700.1 energy-coupling factor ABC transporter permease -
  PSH68_RS04005 (PSH68_04005) - 908124..908339 (+) 216 WP_003171680.1 hypothetical protein -
  PSH68_RS04010 (PSH68_04010) yacG 908336..908536 (-) 201 WP_034102092.1 DNA gyrase inhibitor YacG -
  PSH68_RS04015 (PSH68_04015) coaE 908533..909156 (-) 624 WP_069021704.1 dephospho-CoA kinase -
  PSH68_RS04020 (PSH68_04020) pilD 909153..910019 (-) 867 WP_098465764.1 A24 family peptidase Machinery gene
  PSH68_RS04025 (PSH68_04025) pilC 910016..911224 (-) 1209 WP_305434610.1 type II secretion system F family protein Machinery gene
  PSH68_RS04030 (PSH68_04030) - 911427..911840 (+) 414 WP_305390850.1 pilin -
  PSH68_RS04035 (PSH68_04035) - 911876..913276 (+) 1401 WP_305434611.1 O-antigen ligase -
  PSH68_RS04045 (PSH68_04045) - 913557..913862 (+) 306 WP_034102101.1 DUF6388 family protein -
  PSH68_RS04050 (PSH68_04050) nadC 913937..914785 (-) 849 WP_034102102.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43342.86 Da        Isoelectric Point: 10.3140

>NTDB_id=785798 PSH68_RS04025 WP_305434610.1 910016..911224(-) (pilC) [Pseudomonas lurida strain FP1465]
MDDASTLYAWEGINRKGRRVSGQTTGHSVARVKVQLRQQGISPGHVRKKSPMLPSFVPSIKPADITLFTRQLATLLKAGI
PLLQAFDVIGEGFDNRPMRKLVQGLKQAIAAGTSLAKALRKQPHYFDALYCNLVAAGEQAGALETLLERVAIHREKSEQL
KARIKKAMTYPITVLVVASLVTGVLLVHVVPQFQTLFAGVDGKLPGFTLQVIALSEFMQKAWWIIALGILAAGLGLRHAY
RTFADVRAWLDSCLLKTPLAGKLLSKSAVARYARTLSTTFAAGVPLVQALDSVAGAAGSGPFRQAIEHMRRDVATGMQLN
QSMVASGLFPRMAIQMTAIGEESGTLDSMLEKVASHYEADVDNVVDNLTNLMEPLIMVVLGGIVGALVVAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=785798 PSH68_RS04025 WP_305434610.1 910016..911224(-) (pilC) [Pseudomonas lurida strain FP1465]
ATGGACGACGCTTCAACGCTCTACGCCTGGGAAGGCATCAACCGCAAAGGACGCAGGGTGTCCGGGCAGACCACCGGGCA
CAGCGTTGCAAGGGTCAAGGTTCAGTTACGCCAACAGGGCATCAGCCCTGGGCATGTGCGCAAGAAATCCCCAATGCTGC
CGAGCTTCGTACCCTCGATCAAGCCGGCGGACATCACCCTGTTCACGCGCCAACTGGCTACGCTGCTCAAGGCCGGGATT
CCTCTCCTGCAAGCCTTCGACGTCATCGGTGAAGGTTTCGACAACCGGCCCATGCGTAAGCTGGTGCAAGGGTTGAAACA
GGCGATTGCCGCCGGCACCAGCCTTGCCAAGGCGCTGCGCAAGCAACCTCATTATTTCGACGCGCTGTACTGCAACCTGG
TAGCCGCCGGCGAACAGGCCGGAGCCCTTGAAACCTTGCTGGAACGTGTGGCAATCCACCGAGAGAAGAGCGAACAGCTA
AAGGCCAGGATCAAAAAAGCCATGACCTATCCGATCACCGTGCTGGTGGTCGCCAGTCTCGTCACCGGCGTGCTGCTGGT
CCACGTCGTGCCACAGTTCCAGACGCTGTTCGCCGGCGTCGACGGCAAGCTGCCTGGCTTCACATTGCAGGTGATCGCCC
TTTCCGAGTTCATGCAGAAAGCCTGGTGGATCATCGCGCTGGGCATTCTTGCGGCAGGCTTGGGGTTGCGCCACGCCTAC
CGTACCTTCGCCGATGTTCGTGCCTGGCTGGACAGCTGTTTGTTGAAAACGCCCCTGGCAGGCAAACTGCTGAGCAAATC
CGCCGTGGCCCGCTACGCCCGCACGCTTTCCACCACGTTTGCCGCCGGCGTTCCGTTGGTGCAGGCGCTGGACTCGGTGG
CCGGGGCCGCCGGTTCAGGGCCGTTCAGACAGGCAATCGAACATATGCGACGCGACGTAGCGACGGGCATGCAATTGAAT
CAATCCATGGTCGCCAGCGGCCTGTTTCCCCGCATGGCAATCCAGATGACAGCCATCGGCGAAGAATCAGGCACGCTGGA
CAGCATGCTGGAAAAGGTCGCCAGCCATTACGAGGCCGATGTGGATAACGTGGTCGATAACCTCACCAACCTTATGGAGC
CGCTGATTATGGTGGTACTGGGAGGGATCGTCGGCGCACTGGTGGTCGCGATGTATTTACCGGTATTCCAGTTGGGGAGC
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.596

98.507

0.587
  pilC Acinetobacter baumannii D1279779

51.646

98.259

0.507
  pilC Acinetobacter baylyi ADP1

51.263

98.507

0.505
  pilC Legionella pneumophila strain ERS1305867

48.608

98.259

0.478
  pilC Vibrio cholerae strain A1552

42.172

98.507

0.415
  pilC Vibrio campbellii strain DS40M4

40.302

98.756

0.398
  pilG Neisseria gonorrhoeae MS11

40.992

95.274

0.391
  pilG Neisseria meningitidis 44/76-A

39.323

95.522

0.376