Detailed information NTG0785797

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH68_RS04020
• Genome accession: NZ_CP117464
• Coordinates: 909153..910019 (-)
• Length: 288 a.a.
• NCBI ID: WP_098465764.1
• Uniprot ID: -
• Organism: Pseudomonas lurida strain FP1465
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 904153..915019

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH68_RS03980 (PSH68_03980)	-	904575..905873 (-)	1299	WP_034102086.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH68_RS03985 (PSH68_03985)	-	905934..906107 (-)	174	WP_016976295.1	DUF3094 family protein	-
PSH68_RS03990 (PSH68_03990)	-	906162..906791 (-)	630	WP_010213242.1	DUF1780 domain-containing protein	-
PSH68_RS03995 (PSH68_03995)	-	906895..907362 (+)	468	WP_034102088.1	hypothetical protein	-
PSH68_RS04000 (PSH68_04000)	-	907359..908048 (+)	690	WP_069021700.1	energy-coupling factor ABC transporter permease	-
PSH68_RS04005 (PSH68_04005)	-	908124..908339 (+)	216	WP_003171680.1	hypothetical protein	-
PSH68_RS04010 (PSH68_04010)	yacG	908336..908536 (-)	201	WP_034102092.1	DNA gyrase inhibitor YacG	-
PSH68_RS04015 (PSH68_04015)	coaE	908533..909156 (-)	624	WP_069021704.1	dephospho-CoA kinase	-
PSH68_RS04020 (PSH68_04020)	pilD	909153..910019 (-)	867	WP_098465764.1	A24 family peptidase	Machinery gene
PSH68_RS04025 (PSH68_04025)	pilC	910016..911224 (-)	1209	WP_305434610.1	type II secretion system F family protein	Machinery gene
PSH68_RS04030 (PSH68_04030)	-	911427..911840 (+)	414	WP_305390850.1	pilin	-
PSH68_RS04035 (PSH68_04035)	-	911876..913276 (+)	1401	WP_305434611.1	O-antigen ligase	-
PSH68_RS04045 (PSH68_04045)	-	913557..913862 (+)	306	WP_034102101.1	DUF6388 family protein	-
PSH68_RS04050 (PSH68_04050)	nadC	913937..914785 (-)	849	WP_034102102.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31698.89 Da
• Isoelectric Point: 8.4958

>NTDB_id=785797 PSH68_RS04020 WP_098465764.1 909153..910019(-) (pilD) [Pseudomonas lurida strain FP1465]
MSLLLAGHPWAFIALASVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPAEPAGPTYNLMHPNSCCPQCNHPIRPR
ENIPLLSYLFLRGRCAQCQKAISVRYPLTELACGLISAWVAWHFGFGWPAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNGFGLLTTLPDALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVF
VGLILMRLRKAQASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=785797 PSH68_RS04020 WP_098465764.1 909153..910019(-) (pilD) [Pseudomonas lurida strain FP1465]
TTGAGCCTGCTGCTGGCTGGCCACCCCTGGGCATTTATTGCGCTGGCGTCAGTGCTGGGACTGATCGTCGGCAGTTTTCT
CAACGTGCTGGTGTGGCGCCTGCCAAAGATGCTCGAACGGGAATGGCGTGCGCAGGCCCACGAAGTACTCGGCTTGCCCG
CTGAACCTGCCGGCCCGACCTACAACCTGATGCACCCCAACTCCTGCTGCCCGCAGTGCAACCATCCGATACGCCCGAGG
GAAAACATCCCACTGCTCAGCTACCTGTTTCTGCGAGGCCGCTGCGCCCAATGCCAAAAGGCAATCAGCGTCCGTTATCC
GCTCACTGAACTGGCGTGCGGGTTGATCTCGGCCTGGGTTGCCTGGCATTTCGGCTTTGGCTGGCCAGCGGGCGCGGTGC
TGGTACTGAGTTGGGGGTTGTTGGCGATGAGCCTGATCGATGCCGATCACCAACTGTTGCCGGATGTGCTGGTGATGCCG
CTGCTGTGGCTGGGGCTGATCGTCAACGGGTTCGGACTGCTGACGACACTGCCCGATGCCCTGTGGGGCGCGGTGATCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTTACCGGCAAGGACGGCATGGGCCATGGTGACTTCAAGC
TGCTGGCGCTGCTCGGTGCCTGGGGCGGCTGGCAGATTCTGCCGATGACGCTGTTGATGTCGTCGCTGGTAGGTGTGTTC
GTGGGCTTGATCCTGATGCGCCTGCGCAAGGCCCAGGCATCGGCACCGATGCCATTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.763	96.875	0.521
pilD	Vibrio campbellii strain DS40M4	51.071	97.222	0.497
pilD	Neisseria gonorrhoeae MS11	50.741	93.75	0.476
pilD	Acinetobacter baumannii D1279779	48.718	94.792	0.462
pilD	Acinetobacter nosocomialis M2	48.718	94.792	0.462