Detailed information NTG0785486

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: PSH78_RS15835
• Genome accession: NZ_CP117452
• Coordinates: 3508029..3509144 (-)
• Length: 371 a.a.
• NCBI ID: WP_305495301.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP198
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3503029..3514144

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH78_RS15820 (PSH78_15820)	-	3503572..3504963 (+)	1392	WP_305495295.1	GntP family permease	-
PSH78_RS15825 (PSH78_15825)	-	3504971..3505747 (+)	777	WP_305495297.1	3-hydroxybutyrate dehydrogenase	-
PSH78_RS15830 (PSH78_15830)	-	3505926..3507881 (+)	1956	WP_305495299.1	acetoacetate--CoA ligase	-
PSH78_RS15835 (PSH78_15835)	pilU	3508029..3509144 (-)	1116	WP_305495301.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
PSH78_RS15840 (PSH78_15840)	-	3509278..3511815 (+)	2538	WP_305495303.1	PAS domain S-box protein	-
PSH78_RS15845 (PSH78_15845)	-	3511864..3512139 (+)	276	WP_305495306.1	peptidylprolyl isomerase	-
PSH78_RS15850 (PSH78_15850)	-	3512259..3513173 (-)	915	WP_305495308.1	sugar kinase	-

Sequence

Protein

• Length: 371 a.a.
• Molecular weight: 41169.14 Da
• Isoelectric Point: 6.1923

>NTDB_id=785486 PSH78_RS15835 WP_305495301.1 3508029..3509144(-) (pilU) [Pseudomonas sp. FP198]
MEIDPLLRILASQDGSDLYMSTGAPPCARFEGVLKPLSNQAFKVGDIAGLAESLMDAEQRLEFDRELEMNLAISLAGVGR
FRVNIFKQRNDVSMVIRNVKLDIPRFEDLKLPKVLLETIMQKQGLMLFVGATGSGKSTSLAALIDYRNRNSSGHIITIED
PVEYIHRHKKSIVNQREVGVDTRSFHAALKNTLRQAPDVVLIGEIRDRETMEHALAFADTGHLVISTLHAHNANQALDRV
INFFPEERRAQLLHDLGNNLKAFVSQRLVRTRGGQRRAAVEVMLGSPTVADLIRRNELGELKGIMEKSEELGMQTFDQAL
FNLVVEGAIDEEEALKNADSANNLRLRLKLHAETGAAPPADPPAGEWGLMD

Nucleotide

• Length: 1116 bp

>NTDB_id=785486 PSH78_RS15835 WP_305495301.1 3508029..3509144(-) (pilU) [Pseudomonas sp. FP198]
ATGGAAATTGATCCCTTGTTACGCATCCTGGCAAGCCAGGACGGTTCCGACCTCTACATGTCCACCGGTGCACCGCCCTG
CGCGCGTTTTGAAGGTGTGCTCAAGCCGCTGAGCAACCAGGCGTTCAAGGTCGGCGACATCGCCGGGCTCGCCGAGTCAT
TGATGGACGCCGAACAGCGCCTTGAGTTCGATCGGGAACTGGAAATGAACCTGGCGATTTCCCTGGCCGGTGTCGGGCGG
TTCCGGGTCAACATCTTCAAACAGCGCAACGACGTGTCCATGGTGATCCGCAACGTCAAGCTGGACATCCCGCGTTTCGA
AGACCTGAAGCTGCCCAAGGTGCTGCTGGAAACCATCATGCAGAAGCAGGGGCTGATGTTGTTCGTCGGTGCGACGGGTT
CGGGCAAGTCGACCTCCCTGGCGGCGCTGATCGATTACCGCAACCGCAACAGCAGCGGTCATATCATCACCATCGAGGAC
CCGGTGGAGTATATCCATCGACATAAAAAATCGATCGTCAACCAGCGGGAAGTCGGGGTGGATACGCGCAGTTTCCATGC
CGCGCTCAAGAATACCTTGCGCCAGGCGCCGGACGTGGTGCTGATCGGCGAAATCCGCGACCGGGAAACCATGGAGCATG
CCCTGGCCTTTGCCGATACCGGCCATCTGGTGATTTCCACCCTGCATGCCCACAACGCCAACCAGGCTTTGGACCGGGTG
ATCAATTTTTTCCCGGAAGAGCGCCGGGCGCAACTGCTGCACGATTTGGGCAACAACCTCAAGGCGTTTGTTTCCCAGCG
CCTGGTGCGCACCCGCGGTGGCCAGCGGCGGGCGGCGGTGGAGGTGATGCTGGGCTCGCCGACGGTGGCCGACCTGATCC
GGCGCAACGAGCTGGGCGAGCTCAAGGGCATCATGGAAAAATCCGAGGAACTGGGCATGCAGACGTTCGACCAGGCATTG
TTCAACCTGGTGGTCGAAGGCGCCATCGACGAGGAAGAAGCGCTGAAAAATGCCGATTCGGCGAACAACCTGCGGTTGCG
CTTGAAGCTGCATGCGGAGACGGGGGCCGCGCCGCCGGCCGATCCGCCGGCGGGGGAGTGGGGGCTCATGGACTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (79-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	57.183	95.687	0.547
pilU	Acinetobacter baylyi ADP1	52.066	97.844	0.509
pilU	Vibrio cholerae strain A1552	52.857	94.34	0.499
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	38.005	100	0.38
pilT	Pseudomonas stutzeri DSM 10701	39.826	92.722	0.369
pilT	Pseudomonas aeruginosa PAK	39.826	92.722	0.369
pilT	Vibrio cholerae strain A1552	40.24	89.757	0.361
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	40.24	89.757	0.361