Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH56_RS03985 Genome accession   NZ_CP117446
Coordinates   880150..881358 (-) Length   402 a.a.
NCBI ID   WP_305383521.1    Uniprot ID   -
Organism   Pseudomonas canadensis strain FP2156     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 875150..886358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH56_RS03945 (PSH56_03945) - 875183..876481 (-) 1299 WP_305383519.1 NAD(P)/FAD-dependent oxidoreductase -
  PSH56_RS03950 (PSH56_03950) - 876542..876715 (-) 174 WP_016976295.1 DUF3094 family protein -
  PSH56_RS03955 (PSH56_03955) - 876770..877399 (-) 630 WP_010213242.1 DUF1780 domain-containing protein -
  PSH56_RS03960 (PSH56_03960) - 877503..878192 (+) 690 WP_028618791.1 energy-coupling factor ABC transporter permease -
  PSH56_RS03965 (PSH56_03965) - 878258..878473 (+) 216 WP_003171680.1 hypothetical protein -
  PSH56_RS03970 (PSH56_03970) yacG 878470..878670 (-) 201 WP_028618792.1 DNA gyrase inhibitor YacG -
  PSH56_RS03975 (PSH56_03975) coaE 878667..879290 (-) 624 WP_028618793.1 dephospho-CoA kinase -
  PSH56_RS03980 (PSH56_03980) pilD 879287..880153 (-) 867 WP_305383520.1 A24 family peptidase Machinery gene
  PSH56_RS03985 (PSH56_03985) pilC 880150..881358 (-) 1209 WP_305383521.1 type II secretion system F family protein Machinery gene
  PSH56_RS03990 (PSH56_03990) - 881561..881974 (+) 414 WP_068936050.1 pilin -
  PSH56_RS03995 (PSH56_03995) - 882010..883410 (+) 1401 WP_305383522.1 O-antigen ligase -
  PSH56_RS04005 (PSH56_04005) - 883677..883982 (+) 306 WP_028618798.1 DUF6388 family protein -
  PSH56_RS04010 (PSH56_04010) nadC 884133..884981 (-) 849 WP_122686044.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43469.99 Da        Isoelectric Point: 10.1186

>NTDB_id=785310 PSH56_RS03985 WP_305383521.1 880150..881358(-) (pilC) [Pseudomonas canadensis strain FP2156]
MDDALTQYAWEGINRKGRRVCGQTTGHNLAWVRAQLRQQGISPGHVRKKSSALRGLTPPIKSTDITLLTRQLATLLKAGI
PLLQAFDIIGEGFEHRAVRELVQGLKQAIAAGSSLSDALRKKPRCFDELFCNLVAAGEQAGALEILLERVAIHREKSEQL
RARIKKAMTYPIAVLAVACLVTGVLLIHVVPQFQNLFAGVDGTLPGFTLQVIALSEFMQKAWWIVALGVLAGGMGLRHFY
RAVPAFRRWLDAGLLKTPLAGKLLTKSAVARYARTLSTTFAAGVPLAQALDSVAGAVGSGPFKQAIEHMRHDVSTGMALN
QSMVASGLFPRMAIQMTAIGEESGTLDRMLEKVANHYEADVDNLVDNLTSLMEPLIMVILGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=785310 PSH56_RS03985 WP_305383521.1 880150..881358(-) (pilC) [Pseudomonas canadensis strain FP2156]
ATGGACGACGCTTTAACGCAGTACGCCTGGGAAGGCATCAATCGCAAAGGACGCAGGGTGTGCGGGCAAACCACGGGGCA
CAATCTTGCCTGGGTCAGGGCCCAGTTGCGCCAACAGGGCATCAGCCCAGGGCATGTGCGCAAGAAATCCTCCGCTCTAC
GGGGACTCACACCGCCGATCAAATCGACGGATATCACCCTGCTCACTCGCCAACTTGCGACGCTGCTGAAGGCCGGAATT
CCCCTGCTGCAAGCCTTCGACATCATCGGCGAAGGCTTCGAACACCGCGCTGTGCGTGAGCTGGTGCAAGGACTGAAACA
AGCGATTGCCGCAGGTTCCAGCCTGTCCGACGCCTTGCGCAAAAAGCCTCGCTGCTTCGATGAGCTGTTTTGCAACCTGG
TGGCCGCCGGCGAACAGGCCGGAGCACTGGAAATCCTGCTGGAGCGCGTGGCGATTCATCGGGAAAAGAGTGAGCAGTTA
AGGGCCAGGATCAAAAAAGCCATGACCTATCCGATCGCGGTGCTGGCGGTGGCCTGTCTTGTCACTGGCGTCTTGTTGAT
CCACGTCGTGCCGCAATTCCAGAATCTGTTTGCCGGCGTCGACGGCACGCTGCCCGGCTTTACCTTGCAGGTGATCGCCC
TGTCCGAGTTCATGCAGAAGGCCTGGTGGATCGTAGCCCTTGGCGTTCTCGCGGGAGGCATGGGATTGCGCCACTTCTAT
CGCGCCGTCCCTGCTTTTCGACGCTGGCTGGACGCCGGTTTGTTGAAAACCCCACTCGCAGGCAAACTGCTGACAAAATC
GGCCGTGGCCCGCTACGCACGCACACTGTCCACGACCTTCGCAGCGGGTGTTCCATTGGCTCAGGCATTGGATTCAGTGG
CCGGCGCCGTTGGTTCAGGGCCGTTCAAACAGGCAATCGAGCATATGCGACACGACGTATCCACCGGCATGGCATTGAAT
CAATCCATGGTCGCCAGCGGTCTGTTTCCTCGTATGGCAATCCAGATGACTGCCATCGGCGAGGAGTCAGGCACACTGGA
CCGCATGCTGGAAAAGGTCGCCAACCATTACGAGGCCGACGTGGACAACCTGGTCGACAACCTCACCAGCCTGATGGAGC
CGCTGATCATGGTGATCCTGGGGAGCATTGTCGGTGCGCTGGTAATCGCCATGTACTTGCCGGTCTTCCAGCTGGGGAGC
GCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.252

97.761

0.56
  pilC Acinetobacter baylyi ADP1

50.886

98.259

0.5
  pilC Acinetobacter baumannii D1279779

50.886

98.259

0.5
  pilC Legionella pneumophila strain ERS1305867

49

99.502

0.488
  pilG Neisseria gonorrhoeae MS11

41.709

99.005

0.413
  pilC Vibrio cholerae strain A1552

41.353

99.254

0.41
  pilG Neisseria meningitidis 44/76-A

40.5

99.502

0.403
  pilC Vibrio campbellii strain DS40M4

38.539

98.756

0.381