Detailed information NTG0785309

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH56_RS03980
• Genome accession: NZ_CP117446
• Coordinates: 879287..880153 (-)
• Length: 288 a.a.
• NCBI ID: WP_305383520.1
• Uniprot ID: -
• Organism: Pseudomonas canadensis strain FP2156
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 874287..885153

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH56_RS03945 (PSH56_03945)	-	875183..876481 (-)	1299	WP_305383519.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH56_RS03950 (PSH56_03950)	-	876542..876715 (-)	174	WP_016976295.1	DUF3094 family protein	-
PSH56_RS03955 (PSH56_03955)	-	876770..877399 (-)	630	WP_010213242.1	DUF1780 domain-containing protein	-
PSH56_RS03960 (PSH56_03960)	-	877503..878192 (+)	690	WP_028618791.1	energy-coupling factor ABC transporter permease	-
PSH56_RS03965 (PSH56_03965)	-	878258..878473 (+)	216	WP_003171680.1	hypothetical protein	-
PSH56_RS03970 (PSH56_03970)	yacG	878470..878670 (-)	201	WP_028618792.1	DNA gyrase inhibitor YacG	-
PSH56_RS03975 (PSH56_03975)	coaE	878667..879290 (-)	624	WP_028618793.1	dephospho-CoA kinase	-
PSH56_RS03980 (PSH56_03980)	pilD	879287..880153 (-)	867	WP_305383520.1	A24 family peptidase	Machinery gene
PSH56_RS03985 (PSH56_03985)	pilC	880150..881358 (-)	1209	WP_305383521.1	type II secretion system F family protein	Machinery gene
PSH56_RS03990 (PSH56_03990)	-	881561..881974 (+)	414	WP_068936050.1	pilin	-
PSH56_RS03995 (PSH56_03995)	-	882010..883410 (+)	1401	WP_305383522.1	O-antigen ligase	-
PSH56_RS04005 (PSH56_04005)	-	883677..883982 (+)	306	WP_028618798.1	DUF6388 family protein	-
PSH56_RS04010 (PSH56_04010)	nadC	884133..884981 (-)	849	WP_122686044.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31701.78 Da
• Isoelectric Point: 7.7220

>NTDB_id=785309 PSH56_RS03980 WP_305383520.1 879287..880153(-) (pilD) [Pseudomonas canadensis strain FP2156]
MSLLLVAHPWAFVVMAGVLGLIVGSFLNVLALRLPKMLEREWRAQAHEVLGLPADPAGPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGAISARYPLTELACGLISAWVAWHFGFGWQAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNGFGLLTTLPDALWGAVFGYMSLWSVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVF
VGLILMRLRKAQASAPMPFGPYLAIAGWIALLWSDQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=785309 PSH56_RS03980 WP_305383520.1 879287..880153(-) (pilD) [Pseudomonas canadensis strain FP2156]
TTGAGCCTGTTACTGGTTGCGCATCCGTGGGCTTTTGTCGTGATGGCGGGTGTACTGGGGCTGATCGTCGGCAGTTTCCT
TAACGTGCTGGCATTGCGCCTGCCAAAAATGCTCGAACGGGAATGGCGCGCCCAGGCCCATGAAGTGCTCGGTCTACCCG
CCGATCCCGCTGGGCCGACCTACAACCTGATGCACCCCAATTCCTGCTGCCCGCACTGCAACCATCCGATACGGCCGTGG
GAAAATATCCCACTGCTCAGCTACCTGTTCCTGCGAGGTCGCTGTGCCCATTGCCAAGGTGCCATCAGCGCCCGCTATCC
GCTTACTGAACTGGCGTGTGGACTGATCTCGGCCTGGGTCGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGGCGCAGTGC
TGGTGCTGAGCTGGGGTTTGTTGGCGATGAGCCTGATCGATGCCGACCATCAACTGTTGCCGGATGTGCTGGTGATGCCA
CTGCTGTGGCTGGGGCTGATCGTCAACGGGTTCGGCCTGCTGACGACATTGCCCGACGCCCTGTGGGGCGCGGTGTTCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGCTACCGGCAAGGACGGTATGGGCCACGGCGACTTCAAGT
TACTCGCACTGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGATGACGCTGTTGATGTCGTCGTTGGTCGGCGTGTTC
GTCGGCTTGATCCTGATGCGCCTGCGCAAGGCCCAGGCGTCGGCACCGATGCCGTTTGGTCCGTATCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGAGTGATCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.417	98.264	0.535
pilD	Vibrio campbellii strain DS40M4	50.714	97.222	0.493
pilD	Neisseria gonorrhoeae MS11	50.719	96.528	0.49
pilD	Acinetobacter nosocomialis M2	47.81	95.139	0.455
pilD	Acinetobacter baumannii D1279779	47.81	95.139	0.455