Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   PSH96_RS02100 Genome accession   NZ_CP117436
Coordinates   490954..492282 (+) Length   442 a.a.
NCBI ID   WP_305459969.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2338     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 485954..497282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH96_RS02080 (PSH96_02080) - 486000..488462 (-) 2463 WP_370694344.1 penicillin-binding protein 1A -
  PSH96_RS02085 (PSH96_02085) pilM 488682..489338 (+) 657 WP_305457140.1 type IV pilus biogenesis protein PilM -
  PSH96_RS02090 (PSH96_02090) - 489335..489886 (+) 552 WP_305457142.1 PilN domain-containing protein -
  PSH96_RS02095 (PSH96_02095) - 489883..490884 (+) 1002 WP_305457144.1 pilus assembly protein PilP -
  PSH96_RS02100 (PSH96_02100) pilQ 490954..492282 (+) 1329 WP_305459969.1 type IV pilus secretin PilQ Machinery gene
  PSH96_RS02105 (PSH96_02105) aroK 492287..492805 (+) 519 WP_017138567.1 shikimate kinase AroK -
  PSH96_RS02110 (PSH96_02110) aroB 492929..494029 (+) 1101 WP_305457147.1 3-dehydroquinate synthase -
  PSH96_RS02115 (PSH96_02115) - 494040..495614 (+) 1575 WP_305457149.1 AAA family ATPase -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 48191.21 Da        Isoelectric Point: 4.8895

>NTDB_id=785054 PSH96_RS02100 WP_305459969.1 490954..492282(+) (pilQ) [Pseudomonas sp. FP2338]
MAFAVPNRVDLIHLPPPGSVVPSGAYNGDTLTLNFQNIDLRAVLQQIADVAGLNLVASDEVQGSITLRLKDVPWDQALDL
VLQTKGLDKRVKAGVLLVAPAEELAARELLALESRKQMEELAPLRRELLQVNYAKAADLAKLFQAVTGVDGFTDERGSVA
VDDRTNNIIAYQTRERIDELRRIVAQLDVPVRQVMIEARIVEANVDYDKSLGVRWGGRLNRGNWGAGGISKPLAEGAEPP
ENPPSSPFVDMGSLTGTAGLGIAFITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESSSRGATS
VSFKEASLSLEVTPQITPDGWVIMEVKVTKDEPDYLNKLNDVPPIKKNEVNAKVRVKDGETIVIGGVFSNTQSKVVDKVP
FLGDVPYLGRLFRRDVLAEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=785054 PSH96_RS02100 WP_305459969.1 490954..492282(+) (pilQ) [Pseudomonas sp. FP2338]
ATGGCATTTGCTGTGCCCAATCGCGTCGATCTGATCCATCTGCCGCCTCCTGGCAGTGTGGTTCCCAGTGGCGCCTACAA
CGGCGACACGCTGACCCTCAACTTCCAGAACATCGATTTGCGCGCCGTGTTGCAGCAAATTGCGGATGTGGCCGGGCTTA
ATCTGGTGGCCAGTGATGAAGTGCAAGGCTCGATCACTTTGCGGCTCAAGGACGTGCCCTGGGACCAGGCGCTGGATCTG
GTGCTGCAAACCAAAGGCTTGGATAAGCGCGTGAAGGCCGGCGTTTTGCTGGTGGCGCCTGCCGAAGAGTTGGCGGCCCG
CGAGCTGCTGGCGCTGGAGTCGCGCAAGCAGATGGAAGAGCTGGCGCCCTTGCGGCGCGAGCTGTTGCAGGTCAATTACG
CCAAGGCGGCGGACCTGGCCAAGTTGTTTCAGGCGGTGACAGGCGTTGACGGCTTTACCGATGAGCGCGGCTCGGTGGCG
GTGGATGATCGCACCAACAACATCATCGCCTACCAGACCCGCGAGCGAATTGACGAGCTGCGGCGCATCGTGGCACAGCT
GGATGTGCCGGTACGCCAAGTGATGATCGAGGCGCGGATTGTCGAAGCCAATGTCGATTACGACAAAAGCCTGGGTGTGC
GCTGGGGCGGGCGGCTCAATCGCGGCAACTGGGGCGCGGGCGGTATCAGCAAACCGTTGGCCGAGGGTGCGGAGCCACCT
GAGAATCCGCCCAGTTCGCCGTTTGTCGATATGGGCTCGCTTACCGGTACGGCTGGCCTGGGCATCGCTTTTATTACCGA
CAACCTGTTGCTGGACCTGGAGCTGACGGCCATGGAAAAAACCGGCAACGGCGAAATCGTCTCGCAGCCCAAGGTGGTCA
CTTCCGACAAGGAAACCGCTCGCATCCTCAAGGGCACCGAGATTCCTTATCAGGAGTCCAGCTCGCGTGGCGCCACCTCG
GTGTCGTTCAAGGAGGCCTCGCTGTCGCTGGAGGTGACCCCGCAAATCACCCCGGACGGCTGGGTGATCATGGAGGTCAA
GGTCACCAAGGATGAGCCTGACTACCTGAACAAGCTCAACGACGTACCGCCGATCAAGAAAAACGAGGTCAACGCCAAGG
TGCGGGTCAAGGATGGCGAGACCATCGTCATTGGCGGGGTTTTCTCCAATACCCAAAGCAAAGTGGTAGATAAAGTGCCA
TTTTTGGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGCGATGTGCTGGCGGAGAAAAAATCCGAGCTGCTGGTATT
CCTGACTCCGCGTATTATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(54-100)

Bacterial type II/III secretion system short domain (Secretin_N)

(128-193)

Bacterial type II and III secretion system protein (Secretin)

(277-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

70.252

98.869

0.695
  pilQ Acinetobacter baumannii D1279779

40.486

100

0.452
  pilQ Acinetobacter baumannii strain A118

40.486

100

0.452
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

44.056

97.059

0.428
  pilQ Vibrio cholerae strain A1552

44.056

97.059

0.428
  comQ Acinetobacter baylyi ADP1

41.871

100

0.425
  pilQ Vibrio campbellii strain DS40M4

43.735

95.701

0.419
  pilQ Legionella pneumophila strain Lp02

43.571

95.023

0.414
  pilQ Legionella pneumophila strain ERS1305867

43.571

95.023

0.414