Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH87_RS04155 Genome accession   NZ_CP117435
Coordinates   930431..931639 (-) Length   402 a.a.
NCBI ID   WP_305432678.1    Uniprot ID   -
Organism   Pseudomonas sp. FP453     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 925431..936639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH87_RS04115 (PSH87_04115) - 925469..926767 (-) 1299 WP_017737925.1 NAD(P)/FAD-dependent oxidoreductase -
  PSH87_RS04120 (PSH87_04120) - 926828..927001 (-) 174 WP_016976295.1 DUF3094 family protein -
  PSH87_RS04125 (PSH87_04125) - 927056..927685 (-) 630 WP_016971624.1 DUF1780 domain-containing protein -
  PSH87_RS04130 (PSH87_04130) - 927784..928473 (+) 690 WP_305432673.1 energy-coupling factor ABC transporter permease -
  PSH87_RS04135 (PSH87_04135) - 928539..928754 (+) 216 WP_003171680.1 hypothetical protein -
  PSH87_RS04140 (PSH87_04140) yacG 928751..928951 (-) 201 WP_017737928.1 DNA gyrase inhibitor YacG -
  PSH87_RS04145 (PSH87_04145) coaE 928948..929571 (-) 624 WP_305432674.1 dephospho-CoA kinase -
  PSH87_RS04150 (PSH87_04150) pilD 929568..930434 (-) 867 WP_305432676.1 A24 family peptidase Machinery gene
  PSH87_RS04155 (PSH87_04155) pilC 930431..931639 (-) 1209 WP_305432678.1 type II secretion system F family protein Machinery gene
  PSH87_RS04160 (PSH87_04160) - 931842..932255 (+) 414 WP_026136938.1 pilin -
  PSH87_RS04165 (PSH87_04165) - 932291..933697 (+) 1407 WP_305432680.1 O-antigen ligase -
  PSH87_RS04175 (PSH87_04175) - 933946..934251 (+) 306 WP_017737933.1 DUF6388 family protein -
  PSH87_RS04180 (PSH87_04180) nadC 934325..935173 (-) 849 WP_017737934.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43190.75 Da        Isoelectric Point: 10.0520

>NTDB_id=785033 PSH87_RS04155 WP_305432678.1 930431..931639(-) (pilC) [Pseudomonas sp. FP453]
MDNASTIYAWEGTNRKGRRVCGQTAGHNPALIKAQLRQQGICPGRVRKRASVLPSLTAPIKALDIVLFTRQLATLLKAGI
PLLQALDIVSEGFENPHMQALVNGLKQEIAAGTNLATALRKQPRYFDELYCNLIAAGEQAGALEALLERVAIHLEKTQQL
KARVKKAMTYPAAVLVVASVVCTLLLMHVVPQFQSLFAGVDGELPGFTLGVIALSEFLQRAWWIVAACLGVSIAALRQAY
RVSPGFRHGLQAALLKAPLAGTLMKKSAVARYARTLSTTFSAGVPLVQALDSVAGAVGNGPFRRAIERMRHDVASGIQLN
QAMTGSGLFPRMAIQMTIIGEESGTLDRMLEKVASHYEADVDSLVDRLTSLMEPLIMVVLGSIVGGLVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=785033 PSH87_RS04155 WP_305432678.1 930431..931639(-) (pilC) [Pseudomonas sp. FP453]
ATGGACAACGCTTCAACGATCTACGCCTGGGAAGGCACCAACCGCAAAGGGCGCAGGGTGTGCGGGCAAACCGCAGGCCA
CAACCCCGCACTGATCAAGGCGCAGCTGCGCCAGCAAGGGATCTGCCCTGGGCGTGTGCGCAAGCGCGCCAGTGTCTTGC
CGAGCCTCACAGCACCGATCAAAGCGCTGGATATCGTCCTCTTCACCCGCCAGTTGGCCACACTGTTGAAAGCGGGAATC
CCTCTGCTGCAAGCCCTCGATATTGTCAGTGAAGGCTTCGAAAACCCGCACATGCAAGCACTGGTAAATGGGTTGAAACA
AGAGATCGCCGCCGGCACCAACCTGGCAACCGCGCTGCGTAAACAGCCACGCTATTTCGATGAGTTGTACTGCAACCTGA
TTGCGGCCGGCGAACAAGCCGGCGCCCTGGAAGCACTGCTGGAACGCGTTGCGATACACCTGGAGAAAACCCAGCAACTC
AAGGCGCGGGTCAAGAAGGCCATGACCTATCCCGCGGCGGTGCTGGTGGTCGCCAGCGTGGTCTGTACGCTGCTGCTGAT
GCATGTGGTGCCGCAATTCCAGAGCCTGTTCGCCGGCGTCGATGGCGAATTGCCCGGTTTTACCCTGGGGGTTATTGCCC
TGTCCGAATTCCTGCAACGTGCCTGGTGGATTGTCGCAGCTTGCCTGGGTGTGTCGATTGCCGCGTTGCGCCAGGCTTAT
CGTGTGTCCCCGGGGTTTCGCCACGGGTTGCAAGCCGCTTTATTGAAAGCGCCCCTGGCAGGCACATTGATGAAAAAATC
CGCCGTGGCCCGCTACGCTCGCACACTCTCGACTACGTTTAGCGCAGGCGTTCCCCTGGTGCAGGCCCTGGACTCAGTGG
CTGGCGCAGTCGGCAACGGGCCATTCAGGCGGGCCATCGAGCGCATGCGCCATGATGTCGCCAGCGGGATTCAGTTGAAT
CAAGCCATGACCGGCAGCGGCCTGTTTCCCCGCATGGCGATCCAGATGACGATCATCGGCGAAGAGTCCGGTACGCTGGA
CCGCATGCTGGAAAAGGTCGCCAGCCACTATGAGGCTGACGTAGACAGCCTGGTGGATAGACTCACAAGTTTGATGGAGC
CGCTGATCATGGTCGTGCTGGGGAGCATTGTCGGGGGACTGGTGATTGCGATGTATTTGCCGGTGTTTCAATTGGGGAGC
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.576

98.507

0.567
  pilC Acinetobacter baumannii D1279779

52.405

98.259

0.515
  pilC Acinetobacter baylyi ADP1

51.768

98.507

0.51
  pilC Legionella pneumophila strain ERS1305867

47.089

98.259

0.463
  pilG Neisseria gonorrhoeae MS11

39.848

98.01

0.391
  pilC Vibrio cholerae strain A1552

39.848

98.01

0.391
  pilC Vibrio campbellii strain DS40M4

39.447

99.005

0.391
  pilG Neisseria meningitidis 44/76-A

39.086

98.01

0.383