Detailed information NTG0785032

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH87_RS04150
• Genome accession: NZ_CP117435
• Coordinates: 929568..930434 (-)
• Length: 288 a.a.
• NCBI ID: WP_305432676.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP453
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 924568..935434

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH87_RS04115 (PSH87_04115)	-	925469..926767 (-)	1299	WP_017737925.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH87_RS04120 (PSH87_04120)	-	926828..927001 (-)	174	WP_016976295.1	DUF3094 family protein	-
PSH87_RS04125 (PSH87_04125)	-	927056..927685 (-)	630	WP_016971624.1	DUF1780 domain-containing protein	-
PSH87_RS04130 (PSH87_04130)	-	927784..928473 (+)	690	WP_305432673.1	energy-coupling factor ABC transporter permease	-
PSH87_RS04135 (PSH87_04135)	-	928539..928754 (+)	216	WP_003171680.1	hypothetical protein	-
PSH87_RS04140 (PSH87_04140)	yacG	928751..928951 (-)	201	WP_017737928.1	DNA gyrase inhibitor YacG	-
PSH87_RS04145 (PSH87_04145)	coaE	928948..929571 (-)	624	WP_305432674.1	dephospho-CoA kinase	-
PSH87_RS04150 (PSH87_04150)	pilD	929568..930434 (-)	867	WP_305432676.1	A24 family peptidase	Machinery gene
PSH87_RS04155 (PSH87_04155)	pilC	930431..931639 (-)	1209	WP_305432678.1	type II secretion system F family protein	Machinery gene
PSH87_RS04160 (PSH87_04160)	-	931842..932255 (+)	414	WP_026136938.1	pilin	-
PSH87_RS04165 (PSH87_04165)	-	932291..933697 (+)	1407	WP_305432680.1	O-antigen ligase	-
PSH87_RS04175 (PSH87_04175)	-	933946..934251 (+)	306	WP_017737933.1	DUF6388 family protein	-
PSH87_RS04180 (PSH87_04180)	nadC	934325..935173 (-)	849	WP_017737934.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31748.89 Da
• Isoelectric Point: 7.6432

>NTDB_id=785032 PSH87_RS04150 WP_305432676.1 929568..930434(-) (pilD) [Pseudomonas sp. FP453]
MSLLLSEQPWLFVGMALVLGLIVGSFLNVLVWRLPKMLEREWRAQAQEVLGLPSDPAGPTYNLMFPNSCCPHCSQPIRPW
ENIPVLSYLMLRGRCAHCRGPISARYPFTELACALISAVVAWHFGVGWQAAAILLLSWGLLAMSLIDADHQLLPDVLVLP
LLWLGLILNSFDVQVTLADAVWGAVVGYMSLWSVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLLGVM
GGLILMRLRKTQASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=785032 PSH87_RS04150 WP_305432676.1 929568..930434(-) (pilD) [Pseudomonas sp. FP453]
TTGAGCCTGCTGCTGAGTGAACAACCCTGGCTTTTTGTCGGCATGGCACTGGTGCTGGGCCTGATCGTCGGCAGCTTTCT
CAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAACGCGAATGGCGCGCCCAGGCCCAGGAAGTCCTCGGCCTGCCGA
GCGACCCCGCTGGGCCGACCTACAACCTGATGTTTCCCAACTCCTGCTGCCCCCATTGCAGCCAGCCGATTCGCCCCTGG
GAAAATATCCCCGTGCTCAGCTACCTGATGCTCCGGGGGCGCTGCGCCCACTGCCGTGGGCCGATCAGTGCGCGCTACCC
CTTCACAGAACTGGCCTGTGCGCTGATTTCAGCGGTGGTCGCCTGGCATTTCGGTGTTGGCTGGCAAGCGGCAGCGATCC
TGCTGCTGAGTTGGGGACTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGTTGCCGGATGTACTGGTGCTGCCG
CTGTTGTGGCTGGGGCTGATCCTCAACAGCTTCGACGTGCAGGTGACGCTGGCCGATGCGGTATGGGGCGCAGTGGTCGG
CTACATGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAGGACGGCATGGGCCATGGCGACTTCAAGT
TGCTGGCCCTGCTCGGCGCCTGGGGCGGCTGGCAAATCCTGCCGATGACCTTGCTGATGTCATCGCTGCTCGGGGTGATG
GGCGGGCTGATCCTGATGCGCCTGCGCAAGACCCAGGCGTCGGCGCCCATGCCGTTCGGCCCCTATCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.755	96.528	0.538
pilD	Vibrio campbellii strain DS40M4	51.613	96.875	0.5
pilD	Acinetobacter baumannii D1279779	50.365	95.139	0.479
pilD	Acinetobacter nosocomialis M2	49.635	95.139	0.472
pilD	Neisseria gonorrhoeae MS11	51.163	89.583	0.458