Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH95_RS04550 Genome accession   NZ_CP117433
Coordinates   988057..989265 (-) Length   402 a.a.
NCBI ID   WP_305436978.1    Uniprot ID   -
Organism   Pseudomonas simiae strain FP55     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 983057..994265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH95_RS04510 (PSH95_04510) - 983974..984147 (-) 174 WP_044286631.1 DUF3094 family protein -
  PSH95_RS04515 (PSH95_04515) - 984202..984831 (-) 630 WP_010213242.1 DUF1780 domain-containing protein -
  PSH95_RS04520 (PSH95_04520) - 984935..985403 (+) 469 Protein_880 FAD/FMN-containing dehydrogenase -
  PSH95_RS04525 (PSH95_04525) - 985400..986089 (+) 690 WP_042571059.1 energy-coupling factor ABC transporter permease -
  PSH95_RS04530 (PSH95_04530) - 986165..986380 (+) 216 WP_003171680.1 hypothetical protein -
  PSH95_RS04535 (PSH95_04535) yacG 986377..986577 (-) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  PSH95_RS04540 (PSH95_04540) coaE 986574..987197 (-) 624 WP_010213235.1 dephospho-CoA kinase -
  PSH95_RS04545 (PSH95_04545) pilD 987194..988060 (-) 867 WP_010213234.1 A24 family peptidase Machinery gene
  PSH95_RS04550 (PSH95_04550) pilC 988057..989265 (-) 1209 WP_305436978.1 type II secretion system F family protein Machinery gene
  PSH95_RS04555 (PSH95_04555) - 989459..989881 (+) 423 WP_082001384.1 pilin -
  PSH95_RS04560 (PSH95_04560) - 989917..991317 (+) 1401 WP_047541165.1 O-antigen ligase -
  PSH95_RS04570 (PSH95_04570) - 991584..991889 (+) 306 WP_010213230.1 DUF6388 family protein -
  PSH95_RS04575 (PSH95_04575) nadC 991937..992785 (-) 849 WP_010213228.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43340.72 Da        Isoelectric Point: 9.8698

>NTDB_id=784983 PSH95_RS04550 WP_305436978.1 988057..989265(-) (pilC) [Pseudomonas simiae strain FP55]
MDNASTLYAWEGINRKGSRVSGQTTGHNPALVKAQLRKQGICPGHVRKKSPVLSSLAPSITSTDITLFTRQLATLLKAGI
PLLQAFDIIAEGFDNRALRERVQGLKQAIEAGTSLAEALRKQPRCFDELYCNLVAAGEQAGALETLLERVAIHREKSEQL
KTRIKKAMTYPITVLVVASLVTGVLLVHVVPQFQNLFAGVDGKLPGFTLQVIGLSEFMQKAWWAVALGVLAGGLGLREAY
RRLADFRLWLDSCLLKAPVAGKLLSKSAVARFARTLSTTFAAGVPLLQALDSVAGAAGSGPFRRAIEQMRRDVATGMPLN
QSMLTSGLFPGMAIQMTAIGEESGTLDRMLEKVANHYEADVDNLVDHLTHLMEPLIMVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=784983 PSH95_RS04550 WP_305436978.1 988057..989265(-) (pilC) [Pseudomonas simiae strain FP55]
ATGGACAACGCTTCAACGCTCTACGCCTGGGAAGGCATCAACCGCAAAGGAAGCAGGGTGTCCGGGCAAACCACCGGACA
CAACCCTGCCCTGGTGAAGGCACAATTGCGAAAACAGGGCATCTGCCCAGGGCATGTGCGCAAAAAATCCCCAGTGCTGT
CGAGCCTGGCACCCTCGATCACATCAACCGACATCACCCTGTTCACTCGCCAACTGGCCACCCTGCTGAAGGCCGGTATT
CCGCTGCTGCAGGCCTTCGACATCATCGCTGAGGGCTTCGACAACCGCGCCTTGCGTGAGCGTGTGCAAGGGTTGAAACA
GGCCATCGAAGCCGGCACCAGCCTTGCCGAGGCGCTGCGCAAGCAGCCGCGTTGTTTCGACGAGCTGTACTGCAACCTGG
TGGCCGCCGGCGAACAGGCCGGAGCACTTGAAACCTTGCTGGAGCGCGTGGCGATCCACCGGGAAAAGAGCGAGCAGCTA
AAGACGAGGATCAAAAAAGCCATGACCTATCCGATCACCGTGCTGGTGGTCGCCAGCCTCGTCACCGGCGTGCTGCTGGT
CCACGTCGTGCCACAGTTCCAGAACCTGTTTGCCGGGGTCGACGGCAAGCTGCCGGGTTTCACTCTGCAGGTCATCGGCC
TTTCCGAGTTCATGCAGAAAGCCTGGTGGGCCGTGGCGCTGGGCGTTCTTGCGGGAGGCCTGGGGCTGCGCGAAGCGTAT
CGGCGCTTGGCGGATTTCCGTCTATGGCTGGACAGCTGTTTGTTGAAAGCGCCCGTGGCAGGCAAACTGCTGAGCAAATC
CGCCGTGGCCCGCTTCGCCCGCACGCTGTCCACCACGTTTGCCGCCGGCGTTCCGTTACTGCAGGCGCTGGATTCTGTGG
CCGGTGCCGCCGGTTCCGGGCCATTCAGACGGGCAATCGAACAGATGCGACGCGATGTAGCGACTGGCATGCCATTGAAC
CAATCCATGCTCACCAGCGGCCTGTTCCCCGGCATGGCGATCCAGATGACAGCCATCGGCGAAGAGTCGGGCACACTGGA
CCGCATGCTGGAAAAGGTCGCCAACCATTACGAGGCCGATGTGGACAACCTGGTCGATCACCTCACCCACCTCATGGAGC
CCCTGATCATGGTGGTCCTGGGAGGCATTGTCGGCGCATTGGTGATCGCCATGTACCTGCCAGTCTTCCAGTTGGGGAGT
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.596

98.507

0.587
  pilC Acinetobacter baumannii D1279779

53.418

98.259

0.525
  pilC Acinetobacter baylyi ADP1

51.768

98.507

0.51
  pilC Legionella pneumophila strain ERS1305867

50.253

98.507

0.495
  pilC Vibrio cholerae strain A1552

41.414

98.507

0.408
  pilC Vibrio campbellii strain DS40M4

40.102

98.01

0.393
  pilG Neisseria gonorrhoeae MS11

39.848

98.01

0.391
  pilG Neisseria meningitidis 44/76-A

39.086

98.01

0.383