Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PSH95_RS04545 | Genome accession | NZ_CP117433 |
| Coordinates | 987194..988060 (-) | Length | 288 a.a. |
| NCBI ID | WP_010213234.1 | Uniprot ID | A0A1N7TXT8 |
| Organism | Pseudomonas simiae strain FP55 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 982194..993060
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH95_RS04505 (PSH95_04505) | - | 982615..983913 (-) | 1299 | WP_042571057.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| PSH95_RS04510 (PSH95_04510) | - | 983974..984147 (-) | 174 | WP_044286631.1 | DUF3094 family protein | - |
| PSH95_RS04515 (PSH95_04515) | - | 984202..984831 (-) | 630 | WP_010213242.1 | DUF1780 domain-containing protein | - |
| PSH95_RS04520 (PSH95_04520) | - | 984935..985403 (+) | 469 | Protein_880 | FAD/FMN-containing dehydrogenase | - |
| PSH95_RS04525 (PSH95_04525) | - | 985400..986089 (+) | 690 | WP_042571059.1 | energy-coupling factor ABC transporter permease | - |
| PSH95_RS04530 (PSH95_04530) | - | 986165..986380 (+) | 216 | WP_003171680.1 | hypothetical protein | - |
| PSH95_RS04535 (PSH95_04535) | yacG | 986377..986577 (-) | 201 | WP_003188437.1 | DNA gyrase inhibitor YacG | - |
| PSH95_RS04540 (PSH95_04540) | coaE | 986574..987197 (-) | 624 | WP_010213235.1 | dephospho-CoA kinase | - |
| PSH95_RS04545 (PSH95_04545) | pilD | 987194..988060 (-) | 867 | WP_010213234.1 | A24 family peptidase | Machinery gene |
| PSH95_RS04550 (PSH95_04550) | pilC | 988057..989265 (-) | 1209 | WP_305436978.1 | type II secretion system F family protein | Machinery gene |
| PSH95_RS04555 (PSH95_04555) | - | 989459..989881 (+) | 423 | WP_082001384.1 | pilin | - |
| PSH95_RS04560 (PSH95_04560) | - | 989917..991317 (+) | 1401 | WP_047541165.1 | O-antigen ligase | - |
| PSH95_RS04570 (PSH95_04570) | - | 991584..991889 (+) | 306 | WP_010213230.1 | DUF6388 family protein | - |
| PSH95_RS04575 (PSH95_04575) | nadC | 991937..992785 (-) | 849 | WP_010213228.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31642.80 Da Isoelectric Point: 7.9976
>NTDB_id=784982 PSH95_RS04545 WP_010213234.1 987194..988060(-) (pilD) [Pseudomonas simiae strain FP55]
MSLLLAGHPWAFVALASLLGLIVGSFLNVLVWRLPTMLEREWRAQALEVLGMPAEPAGPTYNLMHPSSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGAISARYPLTELACALISAWVAWRFGFGWQAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNGFGLLTTLPEALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVV
VGLILMRLRKSHASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR
MSLLLAGHPWAFVALASLLGLIVGSFLNVLVWRLPTMLEREWRAQALEVLGMPAEPAGPTYNLMHPSSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGAISARYPLTELACALISAWVAWRFGFGWQAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNGFGLLTTLPEALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVV
VGLILMRLRKSHASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR
Nucleotide
Download Length: 867 bp
>NTDB_id=784982 PSH95_RS04545 WP_010213234.1 987194..988060(-) (pilD) [Pseudomonas simiae strain FP55]
TTGAGCCTGCTGTTGGCCGGACACCCCTGGGCTTTTGTTGCGCTGGCGTCGCTGCTGGGCCTGATCGTCGGCAGCTTTCT
CAACGTGCTGGTGTGGCGCCTTCCAACGATGCTCGAACGGGAATGGCGGGCCCAGGCGCTCGAAGTGCTCGGCATGCCCG
CTGAGCCTGCCGGCCCGACCTACAACCTGATGCACCCCAGTTCCTGCTGCCCACACTGCAATCATCCGATACGTCCGTGG
GAAAATATCCCACTGCTCAGCTACCTGTTTCTGCGAGGCCGCTGCGCCCATTGCCAAGGTGCGATCAGCGCCCGTTATCC
GCTCACTGAACTGGCGTGTGCATTGATCTCAGCCTGGGTGGCCTGGCGTTTCGGCTTTGGCTGGCAGGCGGGCGCAGTGC
TGGTGCTGAGCTGGGGATTGTTGGCGATGAGCCTGATCGATGCAGACCATCAGCTGTTGCCGGATGTGCTAGTGATGCCG
CTGCTGTGGCTGGGGCTGATCGTCAACGGGTTCGGCCTGCTGACGACACTGCCCGAGGCCTTGTGGGGTGCGGTCATCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGACGGCATGGGCCATGGCGACTTCAAGC
TGCTGGCCTTGCTCGGCGCCTGGGGGGGCTGGCAGATCCTGCCCATGACCCTGTTGATGTCGTCGCTGGTGGGTGTGGTC
GTGGGCTTGATCCTGATGCGCCTGCGCAAGTCCCACGCGTCGGCACCGATGCCATTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
TTGAGCCTGCTGTTGGCCGGACACCCCTGGGCTTTTGTTGCGCTGGCGTCGCTGCTGGGCCTGATCGTCGGCAGCTTTCT
CAACGTGCTGGTGTGGCGCCTTCCAACGATGCTCGAACGGGAATGGCGGGCCCAGGCGCTCGAAGTGCTCGGCATGCCCG
CTGAGCCTGCCGGCCCGACCTACAACCTGATGCACCCCAGTTCCTGCTGCCCACACTGCAATCATCCGATACGTCCGTGG
GAAAATATCCCACTGCTCAGCTACCTGTTTCTGCGAGGCCGCTGCGCCCATTGCCAAGGTGCGATCAGCGCCCGTTATCC
GCTCACTGAACTGGCGTGTGCATTGATCTCAGCCTGGGTGGCCTGGCGTTTCGGCTTTGGCTGGCAGGCGGGCGCAGTGC
TGGTGCTGAGCTGGGGATTGTTGGCGATGAGCCTGATCGATGCAGACCATCAGCTGTTGCCGGATGTGCTAGTGATGCCG
CTGCTGTGGCTGGGGCTGATCGTCAACGGGTTCGGCCTGCTGACGACACTGCCCGAGGCCTTGTGGGGTGCGGTCATCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGACGGCATGGGCCATGGCGACTTCAAGC
TGCTGGCCTTGCTCGGCGCCTGGGGGGGCTGGCAGATCCTGCCCATGACCCTGTTGATGTCGTCGCTGGTGGGTGTGGTC
GTGGGCTTGATCCTGATGCGCCTGCGCAAGTCCCACGCGTCGGCACCGATGCCATTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.48 |
96.875 |
0.528 |
| pilD | Vibrio campbellii strain DS40M4 |
50.357 |
97.222 |
0.49 |
| pilD | Neisseria gonorrhoeae MS11 |
50.37 |
93.75 |
0.472 |
| pilD | Acinetobacter nosocomialis M2 |
49.451 |
94.792 |
0.469 |
| pilD | Acinetobacter baumannii D1279779 |
49.084 |
94.792 |
0.465 |