Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH66_RS04670 Genome accession   NZ_CP117432
Coordinates   1016409..1017617 (-) Length   402 a.a.
NCBI ID   WP_305428480.1    Uniprot ID   -
Organism   Pseudomonas sp. FP597     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1011409..1022617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH66_RS04635 (PSH66_04635) - 1012764..1012937 (-) 174 WP_003171674.1 DUF3094 family protein -
  PSH66_RS04640 (PSH66_04640) - 1012992..1013621 (-) 630 WP_305428479.1 DUF1780 domain-containing protein -
  PSH66_RS04645 (PSH66_04645) - 1013751..1014440 (+) 690 WP_042945574.1 energy-coupling factor ABC transporter permease -
  PSH66_RS04650 (PSH66_04650) - 1014517..1014732 (+) 216 WP_003171680.1 hypothetical protein -
  PSH66_RS04655 (PSH66_04655) yacG 1014729..1014929 (-) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  PSH66_RS04660 (PSH66_04660) coaE 1014926..1015549 (-) 624 WP_003171682.1 dephospho-CoA kinase -
  PSH66_RS04665 (PSH66_04665) pilD 1015546..1016412 (-) 867 WP_141064335.1 A24 family peptidase Machinery gene
  PSH66_RS04670 (PSH66_04670) pilC 1016409..1017617 (-) 1209 WP_305428480.1 type II secretion system F family protein Machinery gene
  PSH66_RS04675 (PSH66_04675) - 1017820..1018233 (+) 414 WP_042944156.1 pilin -
  PSH66_RS04680 (PSH66_04680) - 1018261..1019661 (+) 1401 WP_305428481.1 O-antigen ligase -
  PSH66_RS04690 (PSH66_04690) - 1019934..1020239 (+) 306 WP_305428482.1 DUF6388 family protein -
  PSH66_RS04695 (PSH66_04695) nadC 1020303..1021151 (-) 849 WP_003171690.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43135.27 Da        Isoelectric Point: 10.0644

>NTDB_id=784959 PSH66_RS04670 WP_305428480.1 1016409..1017617(-) (pilC) [Pseudomonas sp. FP597]
MNNASTIYAWEGINRKGRRVSGQTTGHNPALVKAQLRQQGISPGRVRKKTAVLPSLAPSVKAAEITLLTRQLATLLKAGI
PLLQAFDIIGEGFDNAPVRDLAQGLKQQIAAGSSLAEALHKHPRYFDDLYCNLVAAGEQAGALETLLERVAVHREKSEQL
KARIKKAMTYPIAVLVVAGLVTGVLLIHVVPQFQSLFAGVDGQLPGFTLQVIALSEFMQRAWWAVMLGLGAGVMGLRQAY
RTSSAFHYWLDAGLLKAPLAGKLLTRSAVARYARTLSTTFAAGVPLVQALDSVAGATGSQPFKKAIEHMRRDVSTGMQLN
HSMASSGLFPAMAIQMTAIGEESGTLERMLEKVASHYEADVDNQVDNLTSLMEPVIMVVLGGIVGALVIAMYLPVFQLGN
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=784959 PSH66_RS04670 WP_305428480.1 1016409..1017617(-) (pilC) [Pseudomonas sp. FP597]
ATGAACAACGCTTCGACCATTTACGCCTGGGAAGGCATCAACCGCAAAGGGCGCAGGGTGTCCGGGCAAACCACGGGGCA
CAACCCTGCCCTGGTCAAGGCGCAACTGCGCCAGCAAGGCATCAGCCCCGGCCGGGTGCGGAAGAAAACCGCCGTGTTGC
CCAGCCTCGCCCCTTCGGTCAAAGCGGCCGAAATCACCCTGCTTACGCGCCAACTGGCGACACTGCTCAAAGCCGGAATC
CCCCTTCTGCAAGCCTTCGACATCATCGGCGAAGGCTTCGACAATGCACCGGTTCGTGACCTGGCCCAGGGCCTTAAACA
GCAGATCGCCGCCGGCAGCAGCCTGGCGGAGGCGTTGCACAAACATCCGCGCTATTTCGATGACCTGTACTGCAATCTGG
TGGCTGCCGGCGAACAGGCCGGCGCACTGGAAACCTTGTTGGAACGCGTGGCGGTTCACCGGGAAAAAAGCGAACAGCTC
AAGGCCAGGATCAAAAAGGCCATGACCTACCCGATCGCAGTGCTGGTGGTTGCCGGCCTTGTCACGGGGGTACTCCTGAT
ACATGTGGTGCCGCAGTTCCAGAGCCTGTTTGCCGGGGTCGACGGGCAACTGCCAGGCTTTACCCTGCAGGTCATCGCCC
TGTCCGAGTTCATGCAGCGCGCCTGGTGGGCAGTGATGCTGGGCCTGGGCGCAGGCGTGATGGGCCTGCGCCAGGCGTAT
CGTACTTCATCGGCTTTCCATTACTGGCTGGATGCCGGTTTGTTGAAAGCGCCGCTGGCAGGCAAACTGCTCACCAGATC
GGCCGTAGCTCGCTACGCCCGCACACTTTCCACCACCTTCGCAGCCGGTGTCCCGCTGGTGCAGGCGCTGGATTCGGTGG
CCGGCGCCACTGGCAGTCAGCCGTTCAAAAAGGCAATCGAACATATGCGTCGCGACGTATCCACAGGCATGCAGCTGAAT
CACTCCATGGCCAGCAGCGGCTTGTTCCCCGCCATGGCGATCCAGATGACAGCCATCGGCGAAGAATCGGGCACCCTGGA
GCGAATGCTGGAAAAAGTCGCCAGCCACTATGAGGCCGATGTGGACAATCAGGTCGATAACCTCACCAGCCTGATGGAGC
CCGTGATCATGGTGGTGCTCGGGGGCATTGTCGGCGCGCTGGTCATCGCCATGTACCTGCCGGTCTTCCAACTGGGGAAT
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.091

98.507

0.582
  pilC Acinetobacter baylyi ADP1

50.253

98.507

0.495
  pilC Acinetobacter baumannii D1279779

50.38

98.259

0.495
  pilC Legionella pneumophila strain ERS1305867

50.127

98.259

0.493
  pilC Vibrio cholerae strain A1552

40.051

97.512

0.391
  pilG Neisseria gonorrhoeae MS11

40.42

94.776

0.383
  pilG Neisseria meningitidis 44/76-A

39.633

94.776

0.376
  pilC Vibrio campbellii strain DS40M4

37.31

98.01

0.366