Detailed information NTG0784958

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH66_RS04665
• Genome accession: NZ_CP117432
• Coordinates: 1015546..1016412 (-)
• Length: 288 a.a.
• NCBI ID: WP_141064335.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP597
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1010546..1021412

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH66_RS04630 (PSH66_04630)	-	1011405..1012703 (-)	1299	WP_003171673.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH66_RS04635 (PSH66_04635)	-	1012764..1012937 (-)	174	WP_003171674.1	DUF3094 family protein	-
PSH66_RS04640 (PSH66_04640)	-	1012992..1013621 (-)	630	WP_305428479.1	DUF1780 domain-containing protein	-
PSH66_RS04645 (PSH66_04645)	-	1013751..1014440 (+)	690	WP_042945574.1	energy-coupling factor ABC transporter permease	-
PSH66_RS04650 (PSH66_04650)	-	1014517..1014732 (+)	216	WP_003171680.1	hypothetical protein	-
PSH66_RS04655 (PSH66_04655)	yacG	1014729..1014929 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
PSH66_RS04660 (PSH66_04660)	coaE	1014926..1015549 (-)	624	WP_003171682.1	dephospho-CoA kinase	-
PSH66_RS04665 (PSH66_04665)	pilD	1015546..1016412 (-)	867	WP_141064335.1	A24 family peptidase	Machinery gene
PSH66_RS04670 (PSH66_04670)	pilC	1016409..1017617 (-)	1209	WP_305428480.1	type II secretion system F family protein	Machinery gene
PSH66_RS04675 (PSH66_04675)	-	1017820..1018233 (+)	414	WP_042944156.1	pilin	-
PSH66_RS04680 (PSH66_04680)	-	1018261..1019661 (+)	1401	WP_305428481.1	O-antigen ligase	-
PSH66_RS04690 (PSH66_04690)	-	1019934..1020239 (+)	306	WP_305428482.1	DUF6388 family protein	-
PSH66_RS04695 (PSH66_04695)	nadC	1020303..1021151 (-)	849	WP_003171690.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31841.86 Da
• Isoelectric Point: 7.6862

>NTDB_id=784958 PSH66_RS04665 WP_141064335.1 1015546..1016412(-) (pilD) [Pseudomonas sp. FP597]
MSVLLSEHPWLFVALAGVLGLIVGSFLNVLTWRLPKMLEREWRAQAHEVLGLPAEPTGPTYNLMHPNSCCPQCDHPIRPW
ENIPLLSYLFLRGRCAHCKAPISARYPLTELACALVSASVAWQFGFGWQAGAVMLLSWGLLAMSLIDADHQLLPDVLVLP
LLWLGLIVNGFGWLTTLSDALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVF
VGLILMRLRRAQASTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=784958 PSH66_RS04665 WP_141064335.1 1015546..1016412(-) (pilD) [Pseudomonas sp. FP597]
TTGAGCGTGCTGTTGAGTGAACATCCGTGGCTTTTTGTCGCGTTGGCGGGAGTACTGGGTTTGATCGTCGGCAGTTTTCT
CAACGTGCTGACGTGGCGCCTGCCGAAAATGCTCGAACGGGAATGGCGTGCCCAGGCCCATGAGGTGCTGGGATTACCCG
CCGAACCCACGGGCCCGACCTACAACCTCATGCACCCGAACTCCTGCTGCCCCCAGTGTGATCATCCGATACGCCCCTGG
GAAAATATCCCGCTGCTCAGCTATCTGTTCCTCAGGGGCCGCTGCGCGCACTGCAAGGCCCCCATCAGCGCACGCTACCC
GCTCACCGAACTCGCCTGCGCGCTGGTCTCGGCGTCGGTGGCCTGGCAATTCGGCTTCGGCTGGCAAGCGGGCGCGGTCA
TGCTGTTGAGCTGGGGGCTGCTGGCGATGAGCCTGATCGATGCGGATCATCAGTTGCTGCCGGATGTGCTGGTGTTGCCG
CTGCTGTGGCTGGGGCTGATCGTCAACGGCTTCGGATGGCTGACGACGTTGTCCGACGCCCTGTGGGGCGCGGTGATCGG
CTACATGAGCCTGTGGAGTGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGACGGCATGGGCCACGGTGATTTCAAAT
TACTGGCGCTCCTAGGTGCCTGGGGGGGCTGGCAAATATTGCCGATGACGCTGCTGATGTCGTCGCTGGTGGGGGTGTTC
GTCGGCTTGATCCTGATGCGCCTGCGCAGGGCCCAGGCTTCGACGCCGATGCCGTTTGGTCCGTATCTGGCCATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.914	96.875	0.542
pilD	Vibrio campbellii strain DS40M4	52.143	97.222	0.507
pilD	Acinetobacter baumannii D1279779	48.54	95.139	0.462
pilD	Acinetobacter nosocomialis M2	48.54	95.139	0.462
pilD	Neisseria gonorrhoeae MS11	50.775	89.583	0.455