Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH80_RS22695 Genome accession   NZ_CP117427
Coordinates   5003839..5005065 (+) Length   408 a.a.
NCBI ID   WP_305418381.1    Uniprot ID   -
Organism   Pseudomonas sp. FP818     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4998839..5010065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH80_RS22670 (PSH80_22665) nadC 5000271..5001119 (+) 849 WP_057958406.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PSH80_RS22675 (PSH80_22670) - 5001186..5001491 (-) 306 WP_057444407.1 DUF6388 family protein -
  PSH80_RS22685 (PSH80_22680) - 5001741..5003147 (-) 1407 WP_170044038.1 O-antigen ligase -
  PSH80_RS22690 (PSH80_22685) - 5003226..5003636 (-) 411 WP_057958404.1 pilin -
  PSH80_RS22695 (PSH80_22690) pilC 5003839..5005065 (+) 1227 WP_305418381.1 type II secretion system F family protein Machinery gene
  PSH80_RS22700 (PSH80_22695) pilD 5005068..5005940 (+) 873 WP_120734166.1 A24 family peptidase Machinery gene
  PSH80_RS22705 (PSH80_22700) coaE 5005937..5006560 (+) 624 WP_057958402.1 dephospho-CoA kinase -
  PSH80_RS22710 (PSH80_22705) yacG 5006557..5006760 (+) 204 WP_032861907.1 DNA gyrase inhibitor YacG -
  PSH80_RS22715 (PSH80_22710) - 5006757..5006972 (-) 216 WP_057441062.1 hypothetical protein -
  PSH80_RS22720 (PSH80_22715) - 5007036..5007725 (-) 690 WP_057958401.1 energy-coupling factor ABC transporter permease -
  PSH80_RS22725 (PSH80_22720) - 5007722..5008189 (-) 468 WP_057441067.1 hypothetical protein -
  PSH80_RS22730 (PSH80_22725) - 5008292..5008921 (+) 630 WP_057441069.1 DUF1780 domain-containing protein -
  PSH80_RS22735 (PSH80_22730) - 5008961..5009134 (+) 174 WP_057441071.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44268.99 Da        Isoelectric Point: 10.2214

>NTDB_id=784841 PSH80_RS22695 WP_305418381.1 5003839..5005065(+) (pilC) [Pseudomonas sp. FP818]
MNDVTVNPAPTATYAWEGTLRNGRKVSGETRGHSPAVIKAQLRRQGINPVRVQMRSSLLSGLRNPITPADVALFTRQLAT
LLKAGIPLLQAFDMIGEGFENRAMRTMVQGLKQEIAAGNSLTGALLKQPQCFNALYCSLIAAGEQAGTLETLLERVATHL
EKSQRLKARIKKAMTYPLVVLLVATLVSSILLIHVVPQFESLFAGIDTPLPRFTLLVIVLSEFMQSAWWMLLLAVAATTW
GIRRSYRRHSGFRLWLDAGLLKVPLAGTLLKKTAVARYARTLATTFAAGVPLAQALDSVAGAAGNEHFKQAVTRMRQDVA
IGMQLNRTMTASGLFPGMAIQMTAIGEESGALDSMLEKVADHYETDVDNLVDNLTSLMEPLIMVVLGSIVGALVIAMYLP
IFQLGTAF

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=784841 PSH80_RS22695 WP_305418381.1 5003839..5005065(+) (pilC) [Pseudomonas sp. FP818]
ATGAATGATGTCACCGTAAACCCGGCCCCCACCGCCACCTACGCCTGGGAAGGCACCCTGCGCAATGGCCGCAAGGTGTC
CGGCGAAACCCGAGGGCATAGCCCGGCCGTGATCAAGGCCCAATTGCGCCGACAAGGGATCAATCCGGTTCGGGTCCAGA
TGCGCTCCAGCCTCCTGTCTGGCCTGCGCAACCCCATCACCCCAGCCGATGTTGCGCTGTTCACCCGCCAACTGGCGACC
CTGCTGAAGGCGGGAATCCCCCTGCTGCAAGCCTTCGACATGATCGGCGAAGGCTTTGAAAACCGGGCCATGCGCACAAT
GGTCCAGGGATTGAAGCAGGAGATTGCCGCCGGCAACAGCCTGACCGGCGCGCTATTGAAACAACCGCAGTGCTTCAACG
CCCTGTATTGCAGCCTGATCGCGGCCGGCGAACAGGCCGGCACCCTGGAAACCCTGCTGGAGCGGGTCGCCACCCACCTG
GAAAAAAGCCAACGCCTCAAGGCCCGGATCAAGAAAGCCATGACCTATCCACTGGTGGTCCTGCTCGTGGCCACCCTGGT
CAGCAGTATCTTGCTGATCCACGTCGTGCCCCAGTTCGAAAGCCTGTTCGCCGGCATCGACACGCCGCTGCCGCGCTTTA
CCCTGCTGGTTATTGTGCTGTCCGAATTCATGCAAAGCGCGTGGTGGATGCTGTTGCTGGCCGTGGCGGCGACTACTTGG
GGCATACGTCGCAGCTATCGTCGACACAGTGGTTTTCGCCTGTGGCTGGACGCCGGTTTGTTGAAAGTGCCATTGGCAGG
CACACTGCTGAAAAAAACCGCTGTCGCCCGCTACGCTCGCACCCTCGCCACCACCTTTGCCGCCGGCGTACCGCTGGCAC
AGGCGTTGGATTCAGTGGCGGGAGCCGCCGGCAACGAACACTTCAAACAAGCAGTCACGCGTATGCGCCAGGACGTAGCA
ATAGGAATGCAATTGAATCGAACCATGACCGCCAGCGGCCTGTTCCCTGGCATGGCGATCCAGATGACAGCCATCGGCGA
AGAATCGGGCGCACTGGACAGCATGCTGGAGAAGGTCGCCGACCATTATGAAACGGACGTCGACAACCTGGTGGACAACC
TGACCAGCCTGATGGAACCGCTGATCATGGTGGTGCTCGGCAGCATTGTCGGGGCGCTGGTGATCGCCATGTACCTGCCG
ATCTTCCAGCTCGGCACGGCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.576

97.059

0.559
  pilC Acinetobacter baylyi ADP1

52.525

97.059

0.51
  pilC Acinetobacter baumannii D1279779

51.515

97.059

0.5
  pilC Legionella pneumophila strain ERS1305867

47.395

98.775

0.468
  pilC Vibrio cholerae strain A1552

40.657

97.059

0.395
  pilG Neisseria gonorrhoeae MS11

39.594

96.569

0.382
  pilC Vibrio campbellii strain DS40M4

38.422

96.324

0.37
  pilG Neisseria meningitidis 44/76-A

39.37

93.382

0.368