Detailed information NTG0784842

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH80_RS22700
• Genome accession: NZ_CP117427
• Coordinates: 5005068..5005940 (+)
• Length: 290 a.a.
• NCBI ID: WP_120734166.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP818
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5000068..5010940

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH80_RS22670 (PSH80_22665)	nadC	5000271..5001119 (+)	849	WP_057958406.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PSH80_RS22675 (PSH80_22670)	-	5001186..5001491 (-)	306	WP_057444407.1	DUF6388 family protein	-
PSH80_RS22685 (PSH80_22680)	-	5001741..5003147 (-)	1407	WP_170044038.1	O-antigen ligase	-
PSH80_RS22690 (PSH80_22685)	-	5003226..5003636 (-)	411	WP_057958404.1	pilin	-
PSH80_RS22695 (PSH80_22690)	pilC	5003839..5005065 (+)	1227	WP_305418381.1	type II secretion system F family protein	Machinery gene
PSH80_RS22700 (PSH80_22695)	pilD	5005068..5005940 (+)	873	WP_120734166.1	A24 family peptidase	Machinery gene
PSH80_RS22705 (PSH80_22700)	coaE	5005937..5006560 (+)	624	WP_057958402.1	dephospho-CoA kinase	-
PSH80_RS22710 (PSH80_22705)	yacG	5006557..5006760 (+)	204	WP_032861907.1	DNA gyrase inhibitor YacG	-
PSH80_RS22715 (PSH80_22710)	-	5006757..5006972 (-)	216	WP_057441062.1	hypothetical protein	-
PSH80_RS22720 (PSH80_22715)	-	5007036..5007725 (-)	690	WP_057958401.1	energy-coupling factor ABC transporter permease	-
PSH80_RS22725 (PSH80_22720)	-	5007722..5008189 (-)	468	WP_057441067.1	hypothetical protein	-
PSH80_RS22730 (PSH80_22725)	-	5008292..5008921 (+)	630	WP_057441069.1	DUF1780 domain-containing protein	-
PSH80_RS22735 (PSH80_22730)	-	5008961..5009134 (+)	174	WP_057441071.1	DUF3094 family protein	-
PSH80_RS22740 (PSH80_22735)	-	5009195..5010493 (+)	1299	WP_057441073.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32068.11 Da
• Isoelectric Point: 7.3428

>NTDB_id=784842 PSH80_RS22700 WP_120734166.1 5005068..5005940(+) (pilD) [Pseudomonas sp. FP818]
MTLDLLLTLHPWLFVWASLVLGLIVGSFLNVLVWRLPKMLERDWRAQAHEILGLPPEPGGPTYNLLHPNSCCPHCSQPIR
PWQNIPVLSYLLLRGRCAQCHGSISPRYPLTELACGLLSAFIAWHYGFGWPAAGVLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLILNYFELYTTLPDALLGAVAGYLSLWSVFWLFKLCTGKDGMGYGDFKLLALLGAWGGWQILPLTLLLASLVG
AIAGVIVLRIRNAQTSVPLPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=784842 PSH80_RS22700 WP_120734166.1 5005068..5005940(+) (pilD) [Pseudomonas sp. FP818]
ATGACCCTGGACCTCCTCCTGACCCTCCATCCCTGGCTGTTCGTCTGGGCTTCACTGGTGCTGGGGCTGATCGTCGGCAG
CTTCCTCAACGTGCTGGTCTGGCGCCTGCCAAAAATGCTCGAGCGCGACTGGCGCGCCCAGGCCCATGAAATACTCGGCC
TGCCCCCGGAACCCGGCGGCCCGACCTATAACCTGTTGCACCCCAACTCCTGCTGCCCGCACTGCTCACAGCCGATTCGC
CCGTGGCAAAACATCCCGGTGCTCAGCTACTTGCTGCTGCGGGGGCGCTGCGCGCAGTGCCACGGTTCCATCAGCCCACG
CTACCCGCTGACCGAACTGGCGTGCGGGCTGCTTTCGGCATTTATTGCCTGGCATTACGGCTTCGGCTGGCCAGCCGCTG
GCGTGCTGTTCTTGAGCTGGGGCTTGCTAGCCATGAGCCTGATCGACGCCGATCACCAACTGCTGCCGGATGTGCTGGTG
CTGCCACTGCTGTGGCTGGGGTTGATCCTCAATTATTTCGAGTTGTACACGACCCTGCCCGATGCCCTGCTGGGCGCGGT
TGCCGGTTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGTTGTGCACCGGCAAGGACGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCCCTGCTCGGTGCCTGGGGCGGTTGGCAGATCCTGCCGCTGACGCTGTTGCTGGCATCGCTGGTGGGG
GCGATCGCAGGGGTGATTGTCTTGCGCATACGCAACGCGCAGACGTCAGTGCCCTTGCCTTTTGGTCCCTATCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.035	98.276	0.531
pilD	Vibrio campbellii strain DS40M4	51.429	96.552	0.497
pilD	Acinetobacter baumannii D1279779	50.181	95.517	0.479
pilD	Acinetobacter nosocomialis M2	49.458	95.517	0.472
pilD	Neisseria gonorrhoeae MS11	52.174	87.241	0.455