Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   Q3V88_RS03700 Genome accession   NZ_CP130537
Coordinates   769016..770098 (+) Length   360 a.a.
NCBI ID   WP_001805005.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA12-SX     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 764016..775098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V88_RS03680 - 764386..765456 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  Q3V88_RS03685 - 765774..766829 (+) 1056 WP_217657517.1 glycosyltransferase family 4 protein -
  Q3V88_RS03690 - 767001..767642 (-) 642 WP_000192949.1 YigZ family protein -
  Q3V88_RS03695 fakB1 767786..768652 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  Q3V88_RS03700 comFA 769016..770098 (+) 1083 WP_001805005.1 DEAD/DEAH box helicase Machinery gene
  Q3V88_RS03705 - 770091..770765 (+) 675 WP_217657516.1 ComF family protein -
  Q3V88_RS03710 raiA 770826..771398 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  Q3V88_RS03715 secA 771812..774343 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  Q3V88_RS03720 - 774385..774484 (+) 100 Protein_720 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42025.60 Da        Isoelectric Point: 9.8922

>NTDB_id=784728 Q3V88_RS03700 WP_001805005.1 769016..770098(+) (comFA) [Staphylococcus aureus strain SA12-SX]
MDNVTRYKITESSQSSSQAYYHLSFALSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=784728 Q3V88_RS03700 WP_001805005.1 769016..770098(+) (comFA) [Staphylococcus aureus strain SA12-SX]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGCATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.053

93.889

0.367