Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PQE20_RS10690 Genome accession   NZ_CP117054
Coordinates   2245918..2247027 (+) Length   369 a.a.
NCBI ID   WP_038897980.1    Uniprot ID   -
Organism   Vibrio harveyi strain VH21FL     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2240918..2252027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQE20_RS10670 (PQE20_10670) rsmB 2241837..2243120 (-) 1284 WP_005450981.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PQE20_RS10675 (PQE20_10675) fmt 2243202..2244149 (-) 948 WP_009701851.1 methionyl-tRNA formyltransferase -
  PQE20_RS10680 (PQE20_10680) def 2244183..2244701 (-) 519 WP_272759113.1 peptide deformylase -
  PQE20_RS10685 (PQE20_10685) - 2244840..2245934 (+) 1095 WP_005450978.1 LysM peptidoglycan-binding domain-containing protein -
  PQE20_RS10690 (PQE20_10690) dprA 2245918..2247027 (+) 1110 WP_038897980.1 DNA-processing protein DprA Machinery gene
  PQE20_RS10695 (PQE20_10695) - 2247030..2247509 (+) 480 WP_005429833.1 DUF494 family protein -
  PQE20_RS10700 (PQE20_10700) - 2247533..2248102 (+) 570 WP_005450974.1 type I DNA topoisomerase -
  PQE20_RS10705 (PQE20_10705) - 2248166..2249299 (-) 1134 WP_005450972.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PQE20_RS10710 (PQE20_10710) purE 2249304..2249789 (-) 486 WP_005440742.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PQE20_RS10715 (PQE20_10715) - 2249989..2250546 (+) 558 WP_017190968.1 L-threonylcarbamoyladenylate synthase -
  PQE20_RS10720 (PQE20_10720) hemF 2250581..2251498 (+) 918 WP_009702131.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39751.44 Da        Isoelectric Point: 6.0412

>NTDB_id=782396 PQE20_RS10690 WP_038897980.1 2245918..2247027(+) (dprA) [Vibrio harveyi strain VH21FL]
MKLRNDTDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVGYSTEQLQLLGFTTKQLQAWSEVDKEVDACLTWASASSHHH
IVTLADTLYPPLLKQTVAPPPLLFIKGEASCLSQPQIAMVGSRNASVDGLQHARQFAADLVKHDLIVTSGLALGIDGHAH
DGALQADGKTIAVLGSGLEQVYPARHRGLARRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQDREVFAIPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSTPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=782396 PQE20_RS10690 WP_038897980.1 2245918..2247027(+) (dprA) [Vibrio harveyi strain VH21FL]
ATGAAACTACGCAATGATACTGACCTCGCCGCCTGGTTAAAGCTGAGCTGCTTGCCAGGCATTGGCGGGGTGAAGATGAA
TAAGCTGCTGAGTAAAGATACGCCAAGCAATATTGTCGGATACTCAACTGAGCAGCTTCAGCTTTTGGGTTTTACCACGA
AGCAACTGCAAGCATGGTCTGAGGTCGATAAAGAAGTCGACGCTTGTCTTACTTGGGCTAGCGCCTCATCTCATCATCAT
ATTGTTACTTTGGCGGATACTCTGTATCCCCCACTTCTCAAACAAACGGTCGCTCCACCTCCTTTACTATTTATAAAGGG
AGAAGCGAGTTGTTTGTCTCAACCTCAAATTGCCATGGTCGGCAGCCGTAATGCTAGTGTTGATGGGCTTCAACACGCAC
GTCAGTTCGCTGCAGATTTGGTGAAACATGATCTGATTGTTACCAGTGGTTTGGCTTTGGGTATCGATGGACACGCTCAT
GATGGTGCTTTGCAAGCGGACGGTAAAACCATTGCGGTATTGGGTTCAGGGTTAGAGCAAGTTTATCCAGCCCGTCACCG
AGGTTTAGCGCGGCGAGTGATGGAAAACGGTGCGTTAGTCTCTGAGTTTCGCCCAGATGCAAAACCTCGAGCAGAAAACT
TCCCACGACGTAATCGAATCATTAGTGGTTTGTCGCTTGGCGTGTTGGTTGTCGAAGCAGCAGAAAAGAGTGGCTCATTA
ATCACCGCTCGCTACGCTCTTGAGCAAGACCGTGAAGTTTTCGCTATACCAGCTTCGATTAATGCTCCCAATGCCAGTGG
TGGTAATCAGTTGATTCGTAATGGGGCTTGTCTCGTACAAAACACTCAAGAGGTGTTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTGGATTTATTTTCTACGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(314-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

92.954

100

0.93
  dprA Vibrio cholerae strain A1552

58.649

100

0.588
  dprA Glaesserella parasuis strain SC1401

46.933

100

0.477
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Legionella pneumophila strain ERS1305867

49.324

80.217

0.396
  dprA Neisseria meningitidis strain C311

36.829

100

0.39
  dprA Neisseria meningitidis MC58

36.829

100

0.39
  dprA Neisseria gonorrhoeae MS11

35.659

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

35.401

100

0.371