Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PO771_RS12280 Genome accession   NZ_CP116902
Coordinates   2469239..2470483 (-) Length   414 a.a.
NCBI ID   WP_272559968.1    Uniprot ID   -
Organism   Aneurinibacillus uraniidurans strain B1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2464239..2475483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO771_RS12260 (PO771_12260) - 2464918..2465472 (+) 555 WP_272563158.1 biotin transporter BioY -
  PO771_RS12265 (PO771_12265) bioD 2465469..2466200 (+) 732 WP_272559965.1 dethiobiotin synthase -
  PO771_RS12270 (PO771_12270) bioA 2466214..2467593 (+) 1380 WP_272559966.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  PO771_RS12275 (PO771_12275) - 2467646..2469238 (-) 1593 WP_272559967.1 DEAD/DEAH box helicase -
  PO771_RS12280 (PO771_12280) cinA 2469239..2470483 (-) 1245 WP_272559968.1 competence/damage-inducible protein A Machinery gene
  PO771_RS12285 (PO771_12285) pgsA 2470524..2471102 (-) 579 WP_272559969.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PO771_RS12290 (PO771_12290) rimO 2471103..2472440 (-) 1338 WP_272559970.1 30S ribosomal protein S12 methylthiotransferase RimO -
  PO771_RS12295 (PO771_12295) - 2472715..2473569 (-) 855 WP_272559972.1 RodZ domain-containing protein -
  PO771_RS12300 (PO771_12300) - 2473602..2474399 (-) 798 WP_272559973.1 DUF3388 domain-containing protein -
  PO771_RS12305 (PO771_12305) - 2474552..2474806 (-) 255 WP_272559974.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44230.66 Da        Isoelectric Point: 4.9748

>NTDB_id=781048 PO771_RS12280 WP_272559968.1 2469239..2470483(-) (cinA) [Aneurinibacillus uraniidurans strain B1]
MKAEIIAVGTELLLGQIANTNAQFLSQKLAEVGVGMYYHTVVGDNAARLYSVIEQALERSDVLLFSGGLGPTKDDLTKET
VARVVGRPLVEDAGAMARIEKYFERRGIPMTENNRKQALVVEGSHVLPNDHGMAPGMAIEYDNKLIIMLPGPPRELYPMF
TEYGLPHILSCMNENVVVHSKVLRFFGIGESALEEELMDLIDSQTNPTIAPLAADAEVTIRLTARAADVAEAVRMIENVE
EQIEKRVGSYIYGYNSDSLASVLVQLAANRGETVAFAESVTGGLVSQMVTSVPGSSAALRGSIVCYTNQVKHDLLGVPNE
VLASEGAVSAEAARIMADEVRVRLGSTYGVSITGEAGPVAGENKPIGLVYIGVSSADGTRVMNVQLSGTRAGIQIRAAKH
ALFATLERIKKGGC

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=781048 PO771_RS12280 WP_272559968.1 2469239..2470483(-) (cinA) [Aneurinibacillus uraniidurans strain B1]
ATGAAAGCGGAAATTATCGCGGTGGGGACAGAGCTTTTGCTTGGACAGATTGCCAATACAAATGCCCAGTTTTTATCGCA
AAAGCTGGCGGAAGTTGGCGTTGGCATGTATTATCATACGGTTGTGGGCGATAATGCTGCGCGGCTGTACAGCGTAATTG
AGCAGGCGCTTGAACGATCTGATGTACTTTTATTTTCCGGGGGACTTGGTCCAACAAAAGATGATCTTACGAAAGAAACG
GTGGCGCGTGTTGTTGGCCGCCCGCTGGTAGAAGATGCGGGGGCTATGGCGCGAATTGAGAAGTATTTTGAGCGACGCGG
CATTCCGATGACAGAGAACAATCGCAAGCAGGCGCTCGTTGTGGAAGGAAGCCACGTGTTACCAAACGATCACGGTATGG
CACCAGGCATGGCAATTGAGTACGATAACAAGTTGATTATCATGCTGCCGGGACCACCGCGCGAGCTGTATCCGATGTTT
ACCGAGTATGGGTTGCCGCATATTCTCTCCTGCATGAATGAGAATGTCGTCGTTCATTCGAAGGTACTTCGCTTCTTTGG
AATCGGGGAATCCGCTCTCGAAGAGGAATTGATGGATCTGATTGACAGCCAGACGAATCCGACCATTGCGCCGCTTGCTG
CAGATGCGGAAGTAACCATTCGCCTGACAGCCCGGGCTGCAGATGTAGCAGAAGCAGTTCGGATGATTGAGAACGTGGAA
GAACAGATTGAGAAGCGGGTCGGCTCATATATTTATGGGTATAATAGCGATTCGCTTGCGTCTGTGCTTGTACAGCTTGC
CGCAAACCGTGGAGAAACGGTAGCATTCGCTGAAAGTGTAACCGGAGGACTTGTCAGTCAGATGGTCACATCCGTACCGG
GCAGCTCGGCTGCATTGCGTGGGAGTATCGTCTGTTATACGAATCAAGTGAAGCATGATTTGCTTGGCGTACCGAATGAG
GTGCTTGCTTCCGAAGGTGCAGTTAGTGCAGAAGCAGCTCGCATTATGGCAGATGAGGTGCGCGTACGTTTGGGCAGTAC
ATATGGAGTTTCTATTACAGGTGAAGCAGGACCTGTTGCGGGAGAAAATAAACCGATCGGGCTCGTATACATTGGTGTAA
GCAGTGCAGATGGCACACGCGTAATGAACGTACAGCTGTCTGGCACACGAGCGGGCATTCAAATACGTGCGGCTAAACAT
GCTTTGTTTGCGACGCTTGAGCGAATAAAAAAGGGTGGTTGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-406)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-166)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.171

99.034

0.527
  cinA Streptococcus mitis NCTC 12261

44.66

99.517

0.444
  cinA Streptococcus mitis SK321

44.417

99.517

0.442
  cinA Streptococcus pneumoniae TIGR4

43.932

99.517

0.437
  cinA Streptococcus mutans UA159

44.226

98.309

0.435
  cinA Streptococcus pneumoniae Rx1

43.689

99.517

0.435
  cinA Streptococcus pneumoniae R6

43.689

99.517

0.435
  cinA Streptococcus pneumoniae D39

43.447

99.517

0.432
  cinA Streptococcus suis isolate S10

40.816

94.686

0.386