Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   PJU73_RS06900 Genome accession   NZ_CP116766
Coordinates   1503778..1505010 (+) Length   410 a.a.
NCBI ID   WP_237091276.1    Uniprot ID   -
Organism   Neisseria lisongii strain ZJ106     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1498778..1510010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU73_RS06880 (PJU73_06880) - 1499143..1499400 (+) 258 WP_237091280.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  PJU73_RS06885 (PJU73_06885) - 1499400..1499825 (+) 426 WP_237091279.1 type II toxin-antitoxin system VapC family toxin -
  PJU73_RS06890 (PJU73_06890) - 1499935..1501680 (-) 1746 WP_237091278.1 potassium/proton antiporter -
  PJU73_RS06895 (PJU73_06895) pilF 1502047..1503720 (+) 1674 WP_237091277.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PJU73_RS06900 (PJU73_06900) pilG 1503778..1505010 (+) 1233 WP_237091276.1 type II secretion system F family protein Machinery gene
  PJU73_RS06905 (PJU73_06905) pilD 1505081..1505956 (+) 876 WP_237091275.1 A24 family peptidase Machinery gene
  PJU73_RS06910 (PJU73_06910) coaE 1505966..1506562 (+) 597 WP_237091274.1 dephospho-CoA kinase -
  PJU73_RS06915 (PJU73_06915) - 1506962..1507906 (+) 945 WP_272607677.1 IS110 family transposase -
  PJU73_RS06920 (PJU73_06920) yacG 1508259..1508456 (+) 198 WP_237092024.1 DNA gyrase inhibitor YacG -
  PJU73_RS06925 (PJU73_06925) rarD 1508470..1509408 (+) 939 WP_237092023.1 EamA family transporter RarD -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45016.78 Da        Isoelectric Point: 10.1919

>NTDB_id=780002 PJU73_RS06900 WP_237091276.1 1503778..1505010(+) (pilG) [Neisseria lisongii strain ZJ106]
MATRKSTTLFGSRKSKRFLFEGTNLHSGRPVQGEISAPDQAAAEQKLKRRGINAVLIRPAKSVRKRKIRSQDIAVFTRQL
STMMKAGLPLLQAFDVAAQGSGHPNLSKLLLHIRTDIEQGSSLAQALARHPQHFDRFYCNLVAAGETGGILETLLERLAL
TQEKNRLLKKQIQTALIYPVSIIAVSIIIILVMMLFVLPSFQTVYADMGAELPWLTQAVMSASDLLAAYGWLPLIGLIAA
AVWFRRRYRRSRNLQKRCDRYLLQLPLLGTTVAQTASARWARTTAALFAAGMPPAEALNTVAGACGNLVYEDATHAIRNQ
VVQGISLTTAMQNSGCFAEMMIRMAAVGEESGALDTMLDKAAEWYENEVDQTVARLSALMEPLIMVILGTLIGILLLAMY
LPLFHLGDAV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=780002 PJU73_RS06900 WP_237091276.1 1503778..1505010(+) (pilG) [Neisseria lisongii strain ZJ106]
ATGGCAACACGCAAATCCACTACCCTCTTCGGCAGCAGAAAAAGCAAACGTTTTCTGTTTGAAGGCACCAACCTGCACAG
CGGCCGCCCCGTGCAGGGCGAAATCAGCGCACCCGACCAAGCCGCCGCCGAACAGAAACTCAAACGGCGGGGCATCAATG
CCGTACTGATCCGCCCTGCAAAATCCGTCCGCAAACGCAAAATCCGCAGCCAAGACATCGCCGTATTCACCCGCCAACTT
TCCACCATGATGAAAGCCGGTTTGCCACTGCTGCAGGCGTTTGACGTTGCCGCACAGGGCAGCGGCCACCCGAATTTGAG
CAAACTGCTGCTGCACATCCGCACCGACATCGAACAAGGCAGCTCGCTGGCTCAGGCACTGGCACGCCACCCGCAGCATT
TCGACCGTTTTTACTGCAATCTGGTGGCAGCAGGCGAAACCGGCGGCATACTGGAAACCCTGTTGGAGCGGCTCGCCCTG
ACACAGGAAAAAAACCGCCTGCTGAAAAAACAGATTCAGACGGCCTTGATTTACCCCGTTTCCATTATCGCCGTTTCCAT
TATCATTATTTTGGTGATGATGCTGTTTGTCCTCCCCTCGTTCCAAACCGTCTATGCCGACATGGGCGCAGAGTTACCAT
GGCTGACGCAGGCTGTGATGAGCGCTTCCGACCTGCTTGCCGCCTACGGCTGGCTACCGCTGATCGGTCTAATTGCCGCC
GCAGTCTGGTTTCGCCGCCGCTACCGCCGCTCGCGCAACCTGCAGAAACGCTGCGACCGCTACCTGCTGCAACTCCCCCT
GCTCGGCACCACCGTTGCCCAAACCGCCTCCGCCCGCTGGGCAAGAACCACCGCCGCCCTGTTCGCCGCCGGCATGCCGC
CCGCCGAAGCACTGAACACCGTTGCCGGAGCCTGCGGCAATCTGGTTTACGAAGATGCCACCCATGCCATCCGCAACCAA
GTCGTACAAGGCATTTCCCTGACCACCGCCATGCAAAACAGCGGCTGCTTTGCCGAAATGATGATCCGCATGGCCGCCGT
CGGCGAAGAATCGGGCGCACTCGACACCATGCTCGACAAAGCCGCCGAATGGTACGAAAACGAAGTCGACCAAACCGTCG
CCCGACTCTCCGCCCTGATGGAACCGCTGATTATGGTGATATTGGGTACCCTGATCGGCATCCTGCTACTGGCCATGTAC
CTACCCCTGTTCCACTTGGGCGATGCCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

54.634

100

0.546
  pilG Neisseria meningitidis 44/76-A

53.902

100

0.539
  pilC Pseudomonas stutzeri DSM 10701

43.142

97.805

0.422
  pilC Acinetobacter baumannii D1279779

42.965

97.073

0.417
  pilC Acinetobacter baylyi ADP1

42.857

97.317

0.417
  pilC Legionella pneumophila strain ERS1305867

41.96

97.073

0.407