Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   PJU73_RS06905 Genome accession   NZ_CP116766
Coordinates   1505081..1505956 (+) Length   291 a.a.
NCBI ID   WP_237091275.1    Uniprot ID   -
Organism   Neisseria lisongii strain ZJ106     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1500081..1510956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU73_RS06895 (PJU73_06895) pilF 1502047..1503720 (+) 1674 WP_237091277.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PJU73_RS06900 (PJU73_06900) pilG 1503778..1505010 (+) 1233 WP_237091276.1 type II secretion system F family protein Machinery gene
  PJU73_RS06905 (PJU73_06905) pilD 1505081..1505956 (+) 876 WP_237091275.1 A24 family peptidase Machinery gene
  PJU73_RS06910 (PJU73_06910) coaE 1505966..1506562 (+) 597 WP_237091274.1 dephospho-CoA kinase -
  PJU73_RS06915 (PJU73_06915) - 1506962..1507906 (+) 945 WP_272607677.1 IS110 family transposase -
  PJU73_RS06920 (PJU73_06920) yacG 1508259..1508456 (+) 198 WP_237092024.1 DNA gyrase inhibitor YacG -
  PJU73_RS06925 (PJU73_06925) rarD 1508470..1509408 (+) 939 WP_237092023.1 EamA family transporter RarD -
  PJU73_RS06930 (PJU73_06930) ispH 1509862..1510830 (-) 969 WP_237092022.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 31653.35 Da        Isoelectric Point: 8.5917

>NTDB_id=780003 PJU73_RS06905 WP_237091275.1 1505081..1505956(+) (pilD) [Neisseria lisongii strain ZJ106]
MTALSDLFRQLDTPTLLLFCAFIGGIIGSFLNVVIYRLPLMMEREFTLFAKNQLQQPLALEDRQTFNLFRPASHCPKCRT
PLNMRQNIPIFGYLLSGGKCRHCGQGFGSRYLRVECVTAVLFAAAAWRFGAGIALIGILAFTSALIALAEIDADTHYLPD
QITLPLLWLGLLLNSDGLYVPLQSAVIGAAAGYLALWLPNAVFHKLTGQTGMGHGDFKLLAALGAWNGVEMLAFTVFAAS
LAGLVAALLLRVKKGQYFAFGPALAVAGWCAAVFRTPIQTAFEHWLGNPIF

Nucleotide


Download         Length: 876 bp        

>NTDB_id=780003 PJU73_RS06905 WP_237091275.1 1505081..1505956(+) (pilD) [Neisseria lisongii strain ZJ106]
ATGACCGCCTTATCCGACCTGTTCCGCCAACTTGATACGCCGACGCTGCTGCTTTTCTGCGCTTTTATCGGCGGTATTAT
CGGCAGTTTTCTTAATGTTGTGATTTACCGCTTGCCGTTGATGATGGAACGGGAATTTACCCTGTTTGCCAAAAATCAGC
TTCAGCAACCGCTTGCGCTGGAAGACAGGCAAACTTTTAACCTGTTCCGACCGGCTTCGCATTGCCCTAAGTGCCGAACG
CCGCTGAATATGCGGCAAAATATCCCGATATTCGGTTATCTGCTGTCAGGCGGTAAATGTCGGCATTGCGGGCAAGGTTT
CGGCAGCCGCTATTTGCGGGTAGAATGCGTTACCGCCGTTCTGTTTGCCGCTGCTGCATGGCGGTTTGGTGCAGGCATTG
CGCTGATCGGCATCTTGGCGTTTACTTCTGCCCTGATTGCTTTGGCGGAAATCGATGCAGACACGCATTATCTGCCTGAC
CAAATCACGTTGCCGCTGTTGTGGCTGGGGCTGCTGCTCAATTCAGACGGTCTGTATGTGCCGCTGCAATCGGCCGTAAT
CGGCGCAGCGGCGGGCTATCTCGCTCTGTGGCTGCCCAATGCAGTGTTCCACAAACTGACCGGACAAACCGGTATGGGAC
ACGGCGATTTCAAACTGCTGGCGGCGCTCGGCGCTTGGAACGGTGTAGAAATGCTGGCATTTACCGTATTTGCCGCTTCA
TTGGCCGGTTTGGTGGCGGCGCTGCTGCTGCGGGTTAAAAAAGGGCAATATTTCGCTTTCGGCCCGGCGCTTGCTGTTGC
CGGTTGGTGCGCTGCCGTATTCCGAACCCCGATTCAGACGGCCTTTGAACACTGGCTGGGCAACCCGATTTTTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(140-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(23-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

52.613

98.625

0.519
  pilD Vibrio cholerae strain A1552

44.964

95.533

0.43
  pilD Acinetobacter baumannii D1279779

42.857

91.409

0.392
  pilD Vibrio campbellii strain DS40M4

42.586

90.378

0.385
  pilD Acinetobacter nosocomialis M2

42.045

90.722

0.381