Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   POF63_RS09830 Genome accession   NZ_CP116708
Coordinates   1927888..1929147 (-) Length   419 a.a.
NCBI ID   WP_001200976.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain CNCTC 10/84 sCas9     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1922888..1934147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF63_RS09795 (POF63_09795) - 1923039..1924580 (-) 1542 WP_000230040.1 membrane protein -
  POF63_RS09800 (POF63_09800) - 1924626..1924748 (-) 123 WP_001285712.1 hypothetical protein -
  POF63_RS09805 (POF63_09805) - 1924831..1925148 (-) 318 WP_000940933.1 DUF1292 domain-containing protein -
  POF63_RS09810 (POF63_09810) ruvX 1925174..1925593 (-) 420 WP_001222109.1 Holliday junction resolvase RuvX -
  POF63_RS09815 (POF63_09815) - 1925593..1925859 (-) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  POF63_RS09820 (POF63_09820) spx 1926061..1926459 (-) 399 WP_000591162.1 transcriptional regulator Spx -
  POF63_RS09825 (POF63_09825) recA 1926675..1927814 (-) 1140 WP_001085742.1 recombinase RecA Machinery gene
  POF63_RS09830 (POF63_09830) cinA 1927888..1929147 (-) 1260 WP_001200976.1 competence/damage-inducible protein A Machinery gene
  POF63_RS09835 (POF63_09835) - 1929236..1929787 (-) 552 WP_000817341.1 DNA-3-methyladenine glycosylase I -
  POF63_RS09840 (POF63_09840) ruvA 1929810..1930400 (-) 591 WP_000272490.1 Holliday junction branch migration protein RuvA -
  POF63_RS09845 (POF63_09845) - 1930402..1931634 (-) 1233 WP_000657482.1 MFS transporter -
  POF63_RS09850 (POF63_09850) mutL 1931666..1933639 (-) 1974 WP_000034611.1 DNA mismatch repair endonuclease MutL -
  POF63_RS09855 (POF63_09855) - 1933864..1934067 (+) 204 WP_000191849.1 cold shock domain-containing protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45396.20 Da        Isoelectric Point: 6.3051

>NTDB_id=779339 POF63_RS09830 WP_001200976.1 1927888..1929147(-) (cinA) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
MRAEIIAVGTEILTGQIVNTNAQFLSEKMAELGIDIYFQTAVGDNEERLLSLLDIASQRSQLVILCGGLGPTEDDLTKQT
LAKFLGKSLTVDLLASQKLDRFFASRPQFARTPNNERQAQLVEGSIPLQNPTGLAVGGIVTSKGVQYMVLPGPPSELKPM
VMEQVVPILSNNGTKLYSRVLRFFGIGESQLVTILEDIIKNQTDPTIAPYAKVSEVTLRLSTKAGNQDEADFKLDSLEKE
ILALKTLDNRKLKDLLYGYGDNNSMARTVLELLKVQNKTITAAESLTAGLFQSQLAEFSGASQVFNGGFTTYSMEAKSQL
LGIPKKKLQEYGVVSHFTAEAMAQQARQLLKADFGIGLTGVAGPDELEGYPAGTVFIGIATPEGVSSIKVSIGGKSRSDV
RHISTLHAFDLVRRALLKI

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=779339 POF63_RS09830 WP_001200976.1 1927888..1929147(-) (cinA) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
GTGAGGGCTGAAATTATCGCTGTAGGAACAGAAATTTTAACAGGACAGATCGTTAATACAAACGCACAATTTTTGTCGGA
GAAAATGGCAGAATTGGGAATTGATATTTATTTCCAGACAGCTGTAGGAGACAATGAGGAACGTTTATTATCGCTTTTAG
ATATAGCTAGTCAGCGCAGTCAATTGGTTATCCTATGTGGTGGACTTGGACCTACAGAGGATGATTTAACGAAGCAAACT
TTGGCTAAATTTTTAGGTAAATCATTAACAGTGGATTTATTAGCTAGTCAAAAATTGGATCGTTTTTTTGCAAGTCGTCC
TCAGTTTGCTAGAACGCCGAATAATGAACGACAAGCTCAATTGGTTGAAGGCTCAATACCTCTACAAAACCCTACTGGTC
TAGCTGTTGGTGGTATCGTTACATCTAAGGGAGTCCAATATATGGTTTTACCAGGTCCGCCTAGTGAATTAAAGCCAATG
GTTATGGAGCAGGTAGTACCTATTTTGTCAAATAATGGCACAAAATTATATTCACGTGTATTGAGATTCTTTGGTATCGG
TGAGAGTCAGTTAGTCACAATCTTAGAAGACATAATTAAGAATCAGACAGACCCAACTATAGCACCATATGCAAAGGTTA
GTGAGGTAACTTTAAGGTTATCAACGAAAGCTGGAAATCAGGATGAGGCCGACTTTAAATTAGATAGCTTAGAAAAAGAA
ATACTTGCTCTTAAGACATTAGATAACCGTAAATTAAAAGATTTATTATATGGTTATGGTGATAATAATAGTATGGCACG
TACTGTTTTAGAATTATTGAAAGTACAAAATAAAACGATTACTGCCGCAGAGAGCTTAACAGCAGGGTTATTTCAATCTC
AGTTAGCAGAATTTTCTGGTGCTTCGCAAGTTTTTAATGGTGGCTTTACGACCTATAGTATGGAAGCAAAATCACAACTT
CTCGGCATCCCTAAGAAAAAATTGCAAGAATATGGAGTTGTCAGTCATTTTACAGCTGAGGCAATGGCTCAGCAAGCTCG
CCAACTTTTAAAAGCAGATTTTGGTATCGGTTTAACGGGAGTTGCTGGTCCTGATGAGTTGGAAGGATACCCTGCAGGTA
CAGTTTTTATTGGGATTGCAACCCCTGAAGGGGTTTCTTCTATTAAAGTATCAATTGGAGGGAAGAGCCGCTCAGATGTC
CGTCATATCAGTACTTTACATGCTTTTGACTTGGTGCGTAGGGCTTTATTAAAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-241)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(263-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

71.463

99.523

0.711
  cinA Streptococcus mitis NCTC 12261

71.223

99.523

0.709
  cinA Streptococcus pneumoniae TIGR4

70.024

99.523

0.697
  cinA Streptococcus pneumoniae Rx1

70.024

99.523

0.697
  cinA Streptococcus pneumoniae R6

70.024

99.523

0.697
  cinA Streptococcus pneumoniae D39

69.784

99.523

0.695
  cinA Streptococcus mutans UA159

68.106

99.523

0.678
  cinA Streptococcus suis isolate S10

54.808

99.284

0.544
  cinA Bacillus subtilis subsp. subtilis str. 168

43.541

99.761

0.434