Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PML95_RS02570 Genome accession   NZ_CP116507
Coordinates   503888..505141 (+) Length   417 a.a.
NCBI ID   WP_272163529.1    Uniprot ID   A0AAE9XFM0
Organism   Vagococcus lutrae strain K204-1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 498888..510141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML95_RS02545 (PML95_02545) yfmF 498982..500253 (+) 1272 WP_248853053.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  PML95_RS02550 (PML95_02550) yfmH 500243..501544 (+) 1302 WP_272163526.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  PML95_RS02555 (PML95_02555) ymfI 501547..502272 (+) 726 WP_272163527.1 elongation factor P 5-aminopentanone reductase -
  PML95_RS02560 (PML95_02560) - 502297..503145 (+) 849 WP_272163528.1 helix-turn-helix domain-containing protein -
  PML95_RS02565 (PML95_02565) pgsA 503169..503747 (+) 579 WP_248848410.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PML95_RS02570 (PML95_02570) cinA 503888..505141 (+) 1254 WP_272163529.1 competence/damage-inducible protein A Machinery gene
  PML95_RS02575 (PML95_02575) recA 505227..506264 (+) 1038 WP_023605862.1 recombinase RecA Machinery gene
  PML95_RS02580 (PML95_02580) rny 506484..508043 (+) 1560 WP_126762880.1 ribonuclease Y -
  PML95_RS02585 (PML95_02585) - 508195..509058 (+) 864 WP_126762878.1 alpha/beta fold hydrolase -
  PML95_RS02590 (PML95_02590) - 509081..509620 (+) 540 WP_023605865.1 HdeD family acid-resistance protein -
  PML95_RS02595 (PML95_02595) - 509796..509996 (+) 201 WP_023605866.1 cold-shock protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45927.12 Da        Isoelectric Point: 4.5477

>NTDB_id=777696 PML95_RS02570 WP_272163529.1 503888..505141(+) (cinA) [Vagococcus lutrae strain K204-1]
MRAEIIAVGTELLIGQVVNTNATFLSEELVGIGYDIYYHSVVGDNPERLKELIGQASQRSELIVLCGGLGPTEDDLTRDV
LADYLKEPMVLDPEGYDKIDTYMTRSGREMTENNRRQALTIQGGQAIPNDTGLAVGTFYQAETTSYLVLPGPPRELKPMF
YHHVIPLLKQQLPQTDQLYSRVLRFFGIGESQLVLELETLIHEQTNPTIAPYAGDTEVRLRLTVKATDETTANEMLDEME
EKIMSQVGDYFYGYGEENSLIKETVKALQAAKRTVASAESLTAGMFMSALGDVPGVSSVFNGGFVTYTNEMKRCLLKIDS
ALLAQHGAVSEACACAMAEQARLLTKSDYGVALTGVAGPDKSEGEPVGSVWIGLSSAISGTQAYHFQLQRDRQYIRQSAM
MRAMDLLRRQVIAENHD

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=777696 PML95_RS02570 WP_272163529.1 503888..505141(+) (cinA) [Vagococcus lutrae strain K204-1]
ATGCGAGCAGAAATTATCGCAGTGGGTACGGAGCTATTAATTGGCCAAGTGGTTAATACCAATGCGACTTTTTTATCAGA
AGAATTAGTGGGGATTGGTTACGATATTTATTATCACAGTGTGGTAGGGGATAACCCAGAGCGTTTAAAAGAGTTAATTG
GACAAGCCTCTCAGAGAAGTGAATTGATTGTGTTGTGTGGGGGATTAGGACCAACAGAAGATGATTTAACGCGAGATGTG
TTAGCTGATTATTTAAAAGAGCCGATGGTGTTAGATCCAGAGGGTTACGATAAGATTGATACGTATATGACACGCTCTGG
TCGCGAGATGACGGAAAATAATCGTAGGCAAGCGTTAACGATTCAAGGAGGTCAAGCGATACCGAATGATACAGGCTTGG
CAGTCGGGACTTTTTATCAAGCTGAGACGACGAGTTATTTAGTCTTACCAGGACCTCCACGTGAGTTAAAGCCGATGTTT
TATCATCATGTTATCCCATTGTTAAAGCAGCAGTTACCTCAAACCGACCAACTGTATTCTCGTGTATTACGCTTTTTTGG
TATCGGGGAGTCACAGCTAGTTTTAGAATTAGAAACATTAATTCACGAGCAAACGAATCCGACTATTGCGCCATACGCAG
GAGATACAGAAGTTCGTTTACGACTGACAGTCAAAGCTACAGATGAGACGACAGCAAATGAGATGCTAGATGAGATGGAA
GAAAAAATTATGTCTCAAGTAGGGGATTATTTCTATGGTTATGGGGAAGAAAATAGTTTGATTAAAGAAACTGTCAAGGC
GTTGCAAGCCGCGAAGCGAACGGTCGCTTCGGCCGAAAGTTTGACTGCCGGAATGTTTATGAGTGCATTGGGAGACGTTC
CAGGTGTTTCTAGTGTCTTTAATGGTGGCTTTGTCACATATACGAATGAGATGAAACGTTGCTTATTAAAGATTGATTCC
GCTTTGCTTGCTCAACACGGGGCTGTTAGTGAGGCGTGTGCGTGTGCGATGGCAGAACAGGCTCGTTTGTTAACAAAGAG
TGATTATGGCGTAGCGTTAACAGGCGTAGCAGGTCCAGATAAAAGTGAGGGTGAGCCTGTAGGAAGTGTGTGGATCGGCC
TTTCTTCTGCGATAAGTGGGACACAGGCTTATCATTTTCAACTTCAGCGAGACCGTCAATATATTCGGCAAAGTGCCATG
ATGCGCGCAATGGACTTATTACGTCGTCAAGTGATAGCAGAAAATCACGACTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

49.882

100

0.506
  cinA Streptococcus pneumoniae R6

49.409

100

0.501
  cinA Streptococcus pneumoniae Rx1

49.409

100

0.501
  cinA Streptococcus mitis NCTC 12261

49.173

100

0.499
  cinA Streptococcus mitis SK321

49.173

100

0.499
  cinA Streptococcus pneumoniae D39

49.173

100

0.499
  cinA Streptococcus mutans UA159

48.21

100

0.484
  cinA Bacillus subtilis subsp. subtilis str. 168

46.21

98.082

0.453
  cinA Streptococcus suis isolate S10

42.961

98.801

0.424