Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PH545_RS14990 Genome accession   NZ_CP116414
Coordinates   3196148..3197257 (-) Length   369 a.a.
NCBI ID   WP_289880413.1    Uniprot ID   -
Organism   Vibrio harveyi strain K2014767     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3191148..3202257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH545_RS14960 (PH545_14960) hemF 3191677..3192594 (-) 918 WP_009699076.1 oxygen-dependent coproporphyrinogen oxidase -
  PH545_RS14965 (PH545_14965) - 3192629..3193186 (-) 558 Protein_2828 L-threonylcarbamoyladenylate synthase -
  PH545_RS14970 (PH545_14970) purE 3193386..3193871 (+) 486 WP_289880411.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PH545_RS14975 (PH545_14975) - 3193876..3195009 (+) 1134 WP_005450972.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PH545_RS14980 (PH545_14980) - 3195073..3195642 (-) 570 WP_005450974.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  PH545_RS14985 (PH545_14985) - 3195666..3196145 (-) 480 WP_005429833.1 DUF494 family protein -
  PH545_RS14990 (PH545_14990) dprA 3196148..3197257 (-) 1110 WP_289880413.1 DNA-processing protein DprA Machinery gene
  PH545_RS14995 (PH545_14995) - 3197241..3198335 (-) 1095 Protein_2834 LysM peptidoglycan-binding domain-containing protein -
  PH545_RS15000 (PH545_15000) def 3198474..3198992 (+) 519 WP_005450979.1 peptide deformylase -
  PH545_RS15005 (PH545_15005) fmt 3199026..3199973 (+) 948 Protein_2836 methionyl-tRNA formyltransferase -
  PH545_RS15010 (PH545_15010) rsmB 3200055..3201338 (+) 1284 WP_289880415.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39779.49 Da        Isoelectric Point: 6.0412

>NTDB_id=777294 PH545_RS14990 WP_289880413.1 3196148..3197257(-) (dprA) [Vibrio harveyi strain K2014767]
MKLRNDTDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVGYSTEQLQLLGFTTKQLQAWSEVDKEVDVCLTWASASSHHH
IVTLADTLYPPLLKQTVAPPPLLFIKGEASCLSQPQIAMVGSRNASVDGLQHARQFAADLVKHDLIVTSGLALGIDGHAH
DGALQADGKTIAVLGSGLEQVYPARHRGLARRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQDREVFAIPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSTPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=777294 PH545_RS14990 WP_289880413.1 3196148..3197257(-) (dprA) [Vibrio harveyi strain K2014767]
ATGAAACTACGCAATGATACTGACCTCGCCGCCTGGTTAAAGCTGAGCTGCTTGCCAGGCATTGGCGGGGTGAAGATGAA
TAAGCTGCTGAGTAAAGATACGCCAAGCAATATTGTCGGATACTCAACTGAGCAGCTTCAGCTTTTGGGTTTTACCACGA
AGCAACTGCAAGCATGGTCTGAGGTCGATAAAGAAGTCGACGTTTGTCTTACTTGGGCTAGCGCCTCATCTCATCATCAT
ATTGTTACTTTGGCGGATACTCTGTATCCCCCACTTCTCAAACAAACGGTCGCTCCACCTCCTTTATTATTTATAAAGGG
AGAAGCGAGTTGTTTGTCTCAACCTCAAATTGCCATGGTCGGCAGTCGTAATGCTAGTGTTGATGGGCTTCAACACGCAC
GTCAGTTCGCTGCAGATTTGGTGAAACATGATCTGATTGTTACCAGTGGTTTGGCTTTGGGTATCGATGGACACGCTCAT
GATGGTGCTTTGCAAGCGGACGGTAAAACCATTGCGGTATTGGGTTCAGGGTTAGAGCAAGTTTATCCAGCCCGTCACCG
AGGTTTAGCGCGGCGAGTGATGGAAAACGGTGCGTTAGTCTCTGAGTTTCGCCCAGATGCAAAACCTCGAGCAGAAAACT
TCCCACGACGTAATCGAATCATTAGTGGTTTGTCGCTTGGCGTGTTGGTTGTCGAAGCAGCAGAAAAGAGTGGCTCATTA
ATCACCGCTCGCTACGCTCTTGAGCAAGACCGTGAAGTTTTCGCTATACCAGCTTCGATTAATGCTCCCAATGCCAGTGG
TGGTAATCAGTTGATTCGTAATGGGGCTTGTCTCGTACAAAACACTCAAGAGGTGTTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTGGATTTATTTTCTACGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(314-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

92.683

100

0.927
  dprA Vibrio cholerae strain A1552

58.649

100

0.588
  dprA Glaesserella parasuis strain SC1401

46.933

100

0.477
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Legionella pneumophila strain ERS1305867

49.324

80.217

0.396
  dprA Neisseria meningitidis strain C311

36.573

100

0.388
  dprA Neisseria meningitidis MC58

36.573

100

0.388
  dprA Neisseria gonorrhoeae MS11

35.401

100

0.371
  dprA Neisseria gonorrhoeae strain FA1090

35.142

100

0.369