Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QWH96_RS00210 Genome accession   NZ_CP128987
Coordinates   30583..31347 (+) Length   254 a.a.
NCBI ID   WP_049519808.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25583..36347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS00200 (QWH96_00200) - 28040..29242 (+) 1203 WP_003062289.1 CHAP domain-containing protein -
  QWH96_RS00205 (QWH96_00205) - 29396..30358 (+) 963 WP_003059859.1 ribose-phosphate diphosphokinase -
  QWH96_RS00210 (QWH96_00210) recO 30583..31347 (+) 765 WP_049519808.1 DNA repair protein RecO Machinery gene
  QWH96_RS00215 (QWH96_00215) plsX 31454..32461 (+) 1008 WP_049519806.1 phosphate acyltransferase PlsX -
  QWH96_RS00220 (QWH96_00220) - 32454..32696 (+) 243 WP_015057180.1 phosphopantetheine-binding protein -
  QWH96_RS00225 (QWH96_00225) purC 32861..33571 (+) 711 WP_003060240.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 30024.22 Da        Isoelectric Point: 5.9068

>NTDB_id=776794 QWH96_RS00210 WP_049519808.1 30583..31347(+) (recO) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MQLNESLGIVLFNRNYREDDKLVKIFTETAGKRMFFVKHISRSKLSSVIQPLTAADFIFKLNESGLSYIDDYNHVDTYQQ
INQDLFRLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLDYEVLTNIFEIHVLERFGIRINFHDCVFCHRVGL
PFDFSHHYSGVLCPEHYHKDDYRNHLDPNVIYLLDRFQTIQFDELRTISLNDEMKRKLRYFIDELYHDYVGIKLKSKTFI
DDLAKWGDIMKPKD

Nucleotide


Download         Length: 765 bp        

>NTDB_id=776794 QWH96_RS00210 WP_049519808.1 30583..31347(+) (recO) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGCAGTTAAACGAGTCATTGGGAATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTGGTCAAGATATTCAC
AGAGACAGCAGGCAAACGTATGTTTTTCGTGAAACATATTAGTCGTTCTAAACTTTCTTCCGTCATTCAACCTTTAACGG
CTGCTGACTTTATATTTAAGTTGAACGAATCAGGTCTTTCTTATATTGACGACTACAATCATGTGGATACTTATCAACAG
ATTAATCAGGACCTTTTTCGACTTTCCTATGCAAGTTATGTAGTGGCTTTGGCAGATGCCGCTATTTCAGATAATGAGCC
AGATCCTCACCTCTTTGCCTTTCTGAAAAAGACACTTGATTTAATGGAAGAGGGGTTGGATTACGAGGTTTTGACCAACA
TTTTTGAAATCCATGTTTTAGAGCGTTTTGGGATTAGAATAAACTTTCATGACTGTGTTTTTTGTCATCGTGTCGGTTTA
CCATTTGATTTTTCACATCACTATTCGGGTGTGCTGTGCCCTGAACATTATCATAAAGATGACTACCGGAATCATCTAGA
TCCTAATGTCATCTATTTACTAGACCGTTTTCAAACCATTCAGTTTGATGAATTGAGAACCATTTCTTTAAATGATGAGA
TGAAAAGAAAACTTCGTTATTTTATTGATGAATTGTATCATGACTATGTAGGAATCAAGTTAAAAAGTAAAACGTTTATT
GATGATTTAGCTAAATGGGGCGATATTATGAAACCAAAGGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.415

96.85

0.614