Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PFX98_RS12965 Genome accession   NZ_CP116346
Coordinates   2794348..2795568 (-) Length   406 a.a.
NCBI ID   WP_285230922.1    Uniprot ID   A0AA95N7L0
Organism   Paucibacter sediminis strain S2-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2789348..2800568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFX98_RS12935 (PFX98_12935) pgi 2789486..2791108 (+) 1623 WP_285230916.1 glucose-6-phosphate isomerase -
  PFX98_RS12940 (PFX98_12940) - 2791105..2791719 (+) 615 WP_285230917.1 HAD family phosphatase -
  PFX98_RS12945 (PFX98_12945) - 2791728..2791922 (-) 195 WP_285230918.1 DNA gyrase inhibitor YacG -
  PFX98_RS12950 (PFX98_12950) zapD 2791934..2792689 (-) 756 WP_285230919.1 cell division protein ZapD -
  PFX98_RS12955 (PFX98_12955) coaE 2792804..2793409 (-) 606 WP_285230920.1 dephospho-CoA kinase -
  PFX98_RS12960 (PFX98_12960) - 2793409..2794344 (-) 936 WP_285230921.1 A24 family peptidase -
  PFX98_RS12965 (PFX98_12965) pilC 2794348..2795568 (-) 1221 WP_285230922.1 type II secretion system F family protein Machinery gene
  PFX98_RS12970 (PFX98_12970) pilF 2795619..2797340 (-) 1722 WP_285230923.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PFX98_RS12980 (PFX98_12980) - 2797677..2798606 (-) 930 WP_285235587.1 polyprenyl synthetase family protein -
  PFX98_RS12985 (PFX98_12985) rplU 2798888..2799199 (+) 312 WP_195797624.1 50S ribosomal protein L21 -
  PFX98_RS12990 (PFX98_12990) rpmA 2799234..2799491 (+) 258 WP_285230924.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44195.69 Da        Isoelectric Point: 9.4892

>NTDB_id=776794 PFX98_RS12965 WP_285230922.1 2794348..2795568(-) (pilC) [Paucibacter sediminis strain S2-9]
MATNSSAKPANEAIYEWEGKDRNGKVVRGELRAGGEAMVSATLRRQGILVSKVKKRRTAGGTNIKQRDIAVFTRQLATMM
RAGVPLLQSFEIVARGSPNPKLTRLLTDIKQDVETGTSLSASFRKHPMYFDALYCNLVEAGETGGILEALLDRLAIYQEK
TVALKNKIKSALTYPVAVMIVAFVVTAVIMIFVVPSFKDVFTSFGADLPAPTLMVIAMSEFFVSYWWAIFGGLGGGIYFF
IQSWKRSEKMQKTMDRLLLKIPVFGDLLYKSAVARWTRTLATMFAAGVPLVEALDSVGGASGNAVFAEATEKIQRDVSTG
SALTTSMQTTGIFPSMVLQMAAIGEESGSLDHMLSKAAEFYEDEVDEAVKALSSLMEPFIIVFLGTIIGGIVVAMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=776794 PFX98_RS12965 WP_285230922.1 2794348..2795568(-) (pilC) [Paucibacter sediminis strain S2-9]
ATGGCGACCAATTCCAGCGCCAAGCCGGCCAATGAGGCCATCTACGAGTGGGAAGGCAAGGACAGGAACGGCAAGGTCGT
GCGCGGTGAGTTGCGCGCCGGCGGCGAAGCCATGGTCAGCGCCACCCTGCGTCGCCAAGGCATTCTGGTCAGCAAGGTCA
AGAAGCGCCGCACCGCGGGCGGCACCAATATCAAACAAAGGGATATTGCCGTGTTCACGCGCCAACTCGCCACCATGATG
CGCGCTGGCGTGCCACTGCTGCAGTCTTTCGAGATCGTGGCGCGCGGCAGCCCCAACCCCAAGCTGACGCGCTTGCTCAC
CGATATCAAGCAGGACGTGGAAACGGGGACTAGCCTGTCCGCCTCGTTTCGCAAGCACCCGATGTACTTCGACGCCCTGT
ACTGCAATTTGGTGGAAGCGGGCGAAACCGGCGGCATCCTGGAAGCCCTGCTCGATCGCCTGGCGATTTACCAGGAAAAG
ACCGTCGCGCTGAAGAACAAGATCAAGTCCGCGTTGACCTATCCCGTGGCGGTCATGATCGTGGCGTTTGTGGTCACCGC
AGTGATCATGATTTTCGTGGTGCCCTCGTTCAAGGACGTCTTCACATCCTTCGGGGCCGATCTGCCCGCGCCCACCTTGA
TGGTGATCGCGATGTCGGAGTTCTTCGTCAGCTACTGGTGGGCCATATTCGGCGGTCTGGGTGGCGGTATCTACTTCTTC
ATCCAGTCCTGGAAGCGCTCCGAGAAGATGCAGAAGACCATGGATCGCCTCTTGCTCAAGATCCCCGTGTTTGGCGATCT
GCTTTACAAGTCAGCCGTCGCGCGTTGGACGCGCACGTTGGCAACCATGTTTGCCGCCGGCGTTCCACTGGTCGAAGCAC
TGGATTCGGTGGGCGGGGCCTCGGGCAACGCCGTATTTGCCGAGGCCACGGAAAAAATTCAGCGTGACGTCTCCACCGGC
TCGGCGCTCACCACCTCGATGCAGACCACCGGGATCTTCCCGAGCATGGTGTTGCAAATGGCCGCCATCGGCGAGGAGTC
CGGCTCGCTGGACCATATGCTGAGCAAGGCGGCGGAGTTCTACGAGGATGAGGTGGACGAGGCCGTGAAGGCGCTCTCCA
GCCTGATGGAGCCATTTATCATCGTGTTTCTCGGCACGATCATTGGCGGCATCGTGGTCGCGATGTATCTGCCCATCTTC
AAGCTGGGTCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.214

99.015

0.567
  pilG Neisseria gonorrhoeae MS11

53.904

97.783

0.527
  pilG Neisseria meningitidis 44/76-A

54.04

97.537

0.527
  pilC Legionella pneumophila strain ERS1305867

52.778

97.537

0.515
  pilC Acinetobacter baumannii D1279779

50.378

97.783

0.493
  pilC Acinetobacter baylyi ADP1

50.251

98.03

0.493
  pilC Vibrio cholerae strain A1552

41.353

98.276

0.406
  pilC Vibrio campbellii strain DS40M4

40.351

98.276

0.397
  pilC Thermus thermophilus HB27

40.25

98.522

0.397