Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PJW04_RS16425 Genome accession   NZ_CP116305
Coordinates   3747866..3749128 (+) Length   420 a.a.
NCBI ID   WP_033479185.1    Uniprot ID   A0A0G8TTY0
Organism   Xanthomonas perforans strain GEV872     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3742866..3754128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW04_RS16400 (PJW04_16400) - 3743005..3743877 (-) 873 WP_008577868.1 lysylphosphatidylglycerol synthase domain-containing protein -
  PJW04_RS16405 (PJW04_16405) - 3743916..3744752 (-) 837 WP_074053365.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  PJW04_RS16410 (PJW04_16410) - 3744736..3746568 (-) 1833 WP_008576878.1 hypothetical protein -
  PJW04_RS16415 (PJW04_16415) - 3746613..3747032 (-) 420 WP_033479197.1 pilin -
  PJW04_RS16420 (PJW04_16420) pilA/pilAI 3747125..3747517 (-) 393 WP_008576871.1 pilin Machinery gene
  PJW04_RS16425 (PJW04_16425) pilC 3747866..3749128 (+) 1263 WP_033479185.1 type II secretion system F family protein Machinery gene
  PJW04_RS16430 (PJW04_16430) - 3749135..3749998 (+) 864 WP_008576868.1 A24 family peptidase -
  PJW04_RS16435 (PJW04_16435) coaE 3750012..3750617 (+) 606 WP_008576866.1 dephospho-CoA kinase -
  PJW04_RS16440 (PJW04_16440) - 3750686..3752020 (-) 1335 WP_008576864.1 HAMP domain-containing sensor histidine kinase -
  PJW04_RS16445 (PJW04_16445) - 3752013..3752690 (-) 678 WP_003490678.1 response regulator transcription factor -
  PJW04_RS16450 (PJW04_16450) - 3752716..3753159 (-) 444 WP_008576857.1 hypothetical protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45796.17 Da        Isoelectric Point: 10.2311

>NTDB_id=776538 PJW04_RS16425 WP_033479185.1 3747866..3749128(+) (pilC) [Xanthomonas perforans strain GEV872]
MSAVRSTIKSKPAAISADQQMSPFVWEGTDKRGVKMKGEQIARNANMLRAELRRQGITPSVVKPKPKPLFGAAGKKITPK
EIAFFSRQMATMMKSGVPIVGSLEIIGNGHKNPRMKQMVGQIRTDIEGGSSLHEAVSKHPVQFDELYRNLVKAGEGAGVL
ETVLDTIASYKENLEALKGKIKKALFYPAMVVAVALLVSSILLIWVVPQFEDVFKGFGAELPAFTQLIVNASRFMVSYWW
LLLLVIVGSIVGFIFAYKRSFAMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYE
KAVLRMREDVSVGYPVNVSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLIEPLIMVFIGTV
VGGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=776538 PJW04_RS16425 WP_033479185.1 3747866..3749128(+) (pilC) [Xanthomonas perforans strain GEV872]
ATGTCGGCAGTCCGTAGCACCATCAAGAGCAAGCCAGCGGCCATTAGCGCCGATCAACAGATGAGCCCGTTCGTCTGGGA
GGGGACAGACAAGCGGGGGGTAAAAATGAAGGGCGAACAGATCGCCCGCAACGCCAATATGTTACGGGCAGAACTTCGTC
GCCAAGGCATCACGCCCAGCGTCGTCAAGCCCAAGCCCAAGCCATTGTTTGGCGCGGCAGGCAAGAAGATCACGCCTAAG
GAAATTGCGTTCTTCAGTCGCCAGATGGCCACCATGATGAAATCTGGCGTGCCTATCGTTGGGTCGCTGGAGATCATCGG
CAATGGTCACAAAAACCCTCGCATGAAACAGATGGTCGGACAAATCCGTACCGACATCGAGGGCGGTTCTTCTCTGCACG
AAGCGGTAAGCAAGCATCCAGTGCAGTTCGACGAGCTGTATCGCAACCTCGTCAAGGCCGGCGAAGGCGCTGGTGTGCTG
GAAACCGTCCTGGACACAATCGCGTCGTATAAAGAGAATCTGGAAGCCCTAAAGGGCAAGATCAAGAAGGCGCTGTTCTA
TCCCGCGATGGTCGTGGCGGTTGCCCTGCTCGTCAGCTCGATCTTGTTGATCTGGGTCGTGCCGCAGTTCGAGGATGTGT
TCAAGGGGTTCGGCGCAGAACTGCCAGCCTTCACCCAGCTGATCGTCAATGCGTCCCGATTCATGGTCTCGTATTGGTGG
CTACTGCTGCTTGTGATCGTTGGCTCGATCGTGGGCTTCATCTTTGCCTACAAGCGCTCGTTTGCGATGCAGCATGGAAT
GGATCGCTTGGTGCTCAAGGTGCCGATCATTGGCCAGATCATGCATAACAGCTCGATTGCGCGCTTTGCGCGCACTACCG
CAGTGACCTTCAAGGCGGGCGTGCCACTGGTGGAGGCACTCGGCATTGTTGCTGGCGCCACCGGTAACTCAGTCTATGAG
AAGGCCGTACTGCGTATGCGCGAGGACGTATCGGTGGGTTATCCGGTCAACGTGTCTATGAAACAGGTCAATCTGTTCCC
TCACATGGTGATCCAGATGACAGCGATCGGCGAGGAAGCGGGCGCACTGGATGCCATGCTGTTCAAGGTAGCCGAGTACT
ACGAGCAGGAAGTAAACAATGCGGTAGATGCACTTAGCAGCCTCATCGAACCCTTGATCATGGTGTTCATTGGTACAGTA
GTCGGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8TTY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.334

96.905

0.507
  pilC Pseudomonas stutzeri DSM 10701

52.764

94.762

0.5
  pilC Legionella pneumophila strain ERS1305867

52.273

94.286

0.493
  pilC Acinetobacter baumannii D1279779

50.86

96.905

0.493
  pilG Neisseria gonorrhoeae MS11

44.25

95.238

0.421
  pilG Neisseria meningitidis 44/76-A

43.641

95.476

0.417
  pilC Vibrio cholerae strain A1552

42.317

94.524

0.4
  pilC Vibrio campbellii strain DS40M4

39.401

95.476

0.376