Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PE064_RS10730 Genome accession   NZ_CP116007
Coordinates   2302245..2303501 (-) Length   418 a.a.
NCBI ID   WP_271249194.1    Uniprot ID   -
Organism   Pseudoxanthomonas mexicana strain DMF-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2297245..2308501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE064_RS10710 (PE064_10710) - 2298038..2298988 (+) 951 WP_271249191.1 Nudix family hydrolase -
  PE064_RS10715 (PE064_10715) - 2299507..2299932 (+) 426 WP_271249192.1 transposase -
  PE064_RS10720 (PE064_10720) coaE 2300721..2301338 (-) 618 WP_271249193.1 dephospho-CoA kinase -
  PE064_RS10725 (PE064_10725) pilD 2301372..2302235 (-) 864 WP_187573334.1 A24 family peptidase Machinery gene
  PE064_RS10730 (PE064_10730) pilC 2302245..2303501 (-) 1257 WP_271249194.1 type II secretion system F family protein Machinery gene
  PE064_RS10735 (PE064_10735) pilB 2303725..2305467 (-) 1743 WP_271249195.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PE064_RS10740 (PE064_10740) - 2305618..2306544 (-) 927 WP_271249196.1 hypothetical protein -
  PE064_RS10745 (PE064_10745) - 2306514..2307122 (-) 609 WP_271249197.1 class I SAM-dependent methyltransferase -
  PE064_RS10750 (PE064_10750) - 2307119..2308093 (-) 975 WP_271249198.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45859.27 Da        Isoelectric Point: 10.2508

>NTDB_id=774879 PE064_RS10730 WP_271249194.1 2302245..2303501(-) (pilC) [Pseudoxanthomonas mexicana strain DMF-5]
MAVTRSAVKKAPAPVRENPLNLFVWEGTDKRGVKMKGEQSSKNANFLRAELRKQGITPTVVKVKPKPLFGAAGKPVTPKE
IAFFSRQLATMMKSGVPIVGALEIIEGGQKNVRMKKMVESIRYDIESGSSLSEAISKHPVQFDELYRNLVRAGESAGVLE
TVLDTIASYKENLEALKGKIKKALFYPAVVIAVALLVSAILLIFVVPQFEAVFKQFGADLPAFTKVIVGASRFMVSNWYI
VFGAIFVAIFSFIFFKKRSLAFQHFIDRVILKVPVIGQVMHNSSIARFSRTLAVTFKAGVPLVEALDTVAGATGNTLYEK
AVFRIRDDVAVGYPLNMSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLIEPFIMIFIGGVI
GAMVVGMYLPIFKLAATM

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=774879 PE064_RS10730 WP_271249194.1 2302245..2303501(-) (pilC) [Pseudoxanthomonas mexicana strain DMF-5]
ATGGCCGTCACTCGTTCCGCCGTCAAGAAAGCGCCCGCGCCCGTCCGCGAGAATCCGCTGAACCTGTTCGTCTGGGAAGG
CACCGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGTCGTCCAAGAACGCCAACTTCCTGCGCGCGGAACTGCGCAAGC
AGGGCATCACCCCGACCGTGGTCAAGGTGAAGCCCAAGCCGCTGTTCGGCGCGGCCGGCAAGCCGGTGACGCCGAAAGAA
ATCGCCTTCTTCAGCCGCCAGCTGGCCACGATGATGAAGTCCGGCGTGCCGATCGTAGGCGCGCTGGAGATCATCGAGGG
CGGGCAGAAGAACGTCCGCATGAAGAAGATGGTCGAGAGCATCCGCTACGACATCGAAAGCGGTTCCTCGCTGTCCGAGG
CCATCAGCAAGCACCCGGTGCAGTTCGATGAGCTGTACCGCAACCTGGTCCGTGCCGGCGAAAGCGCGGGTGTGCTGGAG
ACGGTGCTGGACACCATCGCCAGCTACAAAGAAAACCTGGAGGCGCTGAAAGGCAAGATAAAGAAAGCGCTGTTCTACCC
CGCCGTCGTGATCGCGGTGGCCCTGCTGGTCAGCGCCATCCTGCTGATCTTCGTGGTGCCGCAGTTCGAGGCTGTCTTCA
AGCAGTTCGGTGCCGACCTGCCGGCCTTCACTAAAGTCATCGTCGGGGCGTCGCGCTTCATGGTGTCCAACTGGTACATC
GTGTTTGGTGCGATCTTTGTGGCGATCTTCAGTTTCATCTTCTTCAAGAAACGCTCGCTGGCTTTCCAGCATTTCATCGA
TCGCGTGATCCTGAAGGTCCCGGTGATCGGGCAGGTCATGCACAATTCTTCTATAGCCCGGTTCTCGCGCACCCTAGCGG
TGACCTTCAAGGCCGGCGTGCCCTTGGTGGAAGCACTGGATACGGTTGCGGGCGCGACTGGCAACACGCTCTACGAGAAG
GCTGTGTTCCGCATCCGTGACGACGTTGCCGTAGGCTATCCGCTAAACATGTCGATGAAGCAGGTCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAGGCCGGCGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTACG
AGCAGGAGGTGAACAACGCGGTGGATGCGCTGTCCAGCCTGATCGAGCCCTTCATCATGATCTTCATCGGCGGCGTGATC
GGCGCGATGGTGGTCGGCATGTACCTGCCCATCTTCAAGCTTGCCGCGACGATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.523

95.215

0.519
  pilC Pseudomonas stutzeri DSM 10701

50.253

94.737

0.476
  pilC Acinetobacter baumannii D1279779

50.38

94.498

0.476
  pilC Acinetobacter baylyi ADP1

49.242

94.737

0.467
  pilG Neisseria gonorrhoeae MS11

43.797

94.498

0.414
  pilG Neisseria meningitidis 44/76-A

43.797

94.498

0.414
  pilC Vibrio cholerae strain A1552

40.5

95.694

0.388
  pilC Vibrio campbellii strain DS40M4

39.268

98.086

0.385