Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   PG915_RS02335 Genome accession   NZ_CP115920
Coordinates   515565..517301 (+) Length   578 a.a.
NCBI ID   WP_353498645.1    Uniprot ID   -
Organism   Vibrio chaetopteri strain CB1-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 510565..522301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG915_RS02315 (PG915_02310) pilM 512916..513893 (+) 978 WP_353497714.1 pilus assembly protein PilM -
  PG915_RS02320 (PG915_02315) - 513895..514485 (+) 591 WP_353497715.1 PilN domain-containing protein -
  PG915_RS02325 (PG915_02320) pilO 514485..515069 (+) 585 WP_353497716.1 type 4a pilus biogenesis protein PilO Machinery gene
  PG915_RS02330 (PG915_02325) - 515059..515565 (+) 507 WP_353497717.1 pilus assembly protein PilP -
  PG915_RS02335 (PG915_02330) pilQ 515565..517301 (+) 1737 WP_353498645.1 type IV pilus secretin PilQ family protein Machinery gene
  PG915_RS02340 (PG915_02335) aroK 517487..518005 (+) 519 WP_353497718.1 shikimate kinase AroK -
  PG915_RS02345 (PG915_02340) aroB 518036..519121 (+) 1086 WP_353497719.1 3-dehydroquinate synthase -
  PG915_RS02350 (PG915_02345) - 519226..520719 (+) 1494 WP_353497720.1 AAA family ATPase -
  PG915_RS02355 (PG915_02350) - 520878..521702 (+) 825 WP_353497721.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 63170.97 Da        Isoelectric Point: 4.4516

>NTDB_id=774439 PG915_RS02335 WP_353498645.1 515565..517301(+) (pilQ) [Vibrio chaetopteri strain CB1-14]
MEKHVQRLVVQGINFLIYGLALSIGLLTSGELAANEITNVSFQLNEQRQGVLTVTLSEQDSAVDVSGSDNGLNIMLRQTK
VTPEHLSIYDVTDFATPVTTIELFDESPDVRLVVRTKQTVDYQYVVADNQLRVTFVELSQARADEKALESRNKGQLTSIN
FQDMPVRNVLQLLAEYNDFNLVVSDTVQGNLTLRLDSVPWTDVLDIILRVKGLDKRVKGDVVLVAPKAELDRQEKLELER
HQLTEKIGKLASEIVKINYAKASEMAAMVGGNETLSMLSERGSVTVDERTNSLLLRDLPDNIEVIKSIIAELDIPVKQVQ
IEARVVTIREGNIEELGIRWGVSSSNGTTTVGGSIESNLVAAGSGEKLEIDDFLNVNLPALSDNASSIAFQVASLGTNTL
LDLELSALQNESKAEIISSPRLITTNKKSAYIEQGTEIPYLKSTSSGATAVEFKKAVLSLTVTPQITPDNRLILDLDVTQ
DQVGEILKTLEGETVAIDTQRIGTQVLVNNGETVVLGGIYQHTFSNKIDKVPLLGDIPGLGALFRRTYENIGKSELLIFV
TPKIITPTPVLTDLGNPL

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=774439 PG915_RS02335 WP_353498645.1 515565..517301(+) (pilQ) [Vibrio chaetopteri strain CB1-14]
ATGGAGAAACACGTGCAACGTTTAGTGGTGCAGGGCATCAATTTTCTTATCTATGGTCTTGCATTGAGCATTGGCTTGCT
GACAAGTGGCGAACTTGCGGCTAATGAAATTACCAACGTTTCATTTCAACTCAACGAGCAGCGTCAGGGGGTATTGACGG
TTACTCTGTCCGAGCAGGACAGCGCTGTTGATGTCAGTGGCAGCGACAATGGTCTGAACATTATGCTTCGGCAAACGAAA
GTGACGCCTGAGCATTTGTCTATTTATGATGTCACCGATTTTGCCACACCCGTCACCACCATCGAACTTTTTGATGAGTC
GCCTGATGTGCGTTTAGTCGTGAGAACCAAACAAACGGTTGATTATCAATACGTGGTAGCGGATAACCAGCTTCGCGTTA
CGTTTGTTGAGCTTAGCCAAGCTCGCGCTGACGAGAAGGCATTGGAGTCGCGCAACAAAGGTCAGCTTACCTCGATCAAT
TTTCAAGATATGCCAGTTCGTAACGTGCTGCAGTTACTTGCTGAGTACAATGATTTTAACTTAGTTGTTTCAGATACGGT
GCAAGGCAATTTGACGCTGCGTCTTGATAGTGTGCCGTGGACAGATGTACTTGATATTATTCTGCGCGTTAAAGGCCTTG
ATAAACGAGTCAAAGGGGATGTCGTGCTGGTGGCGCCAAAGGCAGAACTTGACCGACAGGAAAAGCTTGAGCTAGAGCGT
CATCAACTGACTGAAAAAATTGGTAAGTTGGCGTCAGAAATCGTCAAGATTAATTACGCCAAAGCCTCTGAAATGGCCGC
CATGGTCGGTGGAAATGAGACCCTCAGCATGCTATCTGAGCGCGGCTCTGTGACGGTCGATGAGCGCACCAATTCACTAT
TGCTTCGCGATCTTCCTGACAATATAGAAGTCATTAAAAGCATTATTGCTGAGCTCGATATCCCCGTAAAACAGGTTCAA
ATTGAAGCACGAGTGGTGACGATTAGAGAAGGTAACATTGAAGAACTGGGGATCCGCTGGGGAGTGAGTTCATCCAATGG
CACCACGACTGTTGGCGGCTCTATTGAAAGCAATCTTGTTGCCGCAGGTAGTGGCGAAAAACTTGAGATAGATGATTTTT
TGAACGTCAATTTGCCAGCGCTATCTGATAATGCATCAAGTATTGCGTTTCAAGTGGCGAGTCTTGGTACCAATACCTTG
CTCGACCTTGAGCTTTCAGCACTACAAAACGAATCAAAAGCAGAAATTATCTCTAGCCCAAGGTTGATCACCACCAATAA
GAAGTCGGCGTATATTGAGCAAGGGACAGAGATCCCGTATCTCAAATCTACCTCAAGTGGCGCCACTGCTGTGGAGTTTA
AAAAAGCGGTGCTCTCGCTGACTGTTACGCCGCAAATTACCCCGGATAACCGGTTAATACTTGACCTCGATGTTACCCAA
GATCAAGTGGGGGAAATACTGAAAACACTAGAGGGAGAAACGGTCGCCATTGACACTCAACGTATCGGTACTCAGGTTCT
CGTGAATAACGGTGAGACTGTGGTGCTTGGTGGAATTTACCAACACACCTTTTCCAATAAAATCGATAAAGTGCCACTTT
TAGGTGATATCCCAGGCTTGGGCGCATTATTTCGACGAACCTATGAAAATATCGGTAAGAGTGAGCTACTAATCTTTGTG
ACGCCGAAGATTATTACCCCAACACCAGTACTCACAGATCTTGGTAACCCTTTGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(407-565)

Bacterial type II/III secretion system short domain (Secretin_N)

(253-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

62.238

98.962

0.616
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

62.238

98.962

0.616
  pilQ Vibrio campbellii strain DS40M4

61.664

95.675

0.59
  pilQ Legionella pneumophila strain ERS1305867

42.23

94.637

0.4
  pilQ Legionella pneumophila strain Lp02

42.23

94.637

0.4
  pilQ Acinetobacter baumannii strain A118

37.436

100

0.379
  pilQ Acinetobacter baumannii D1279779

37.436

100

0.379
  comQ Acinetobacter baylyi ADP1

37.543

100

0.375